GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005258-TA|BGIBMGA005258-PA|undefined
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   1.8  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   5.6  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    24   7.4  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/86 (20%), Positives = 38/86 (44%)

Query: 35  LLPIAQRHGGQGIERRDKRQRDIVLDVKLLARVSLIDDRGCVGPTGNTTAYVFGGACVLA 94
           L  + +R   Q ++R    +RD V+D  L    +++      G +  T A     A    
Sbjct: 106 LSSLRKRSNNQHMKRHPHHKRDDVIDSTLTVYETVMYTTAVYGDSATTPAASEAQASSDI 165

Query: 95  MAAVIAVSARGVKRLLNALRPAPVSA 120
           ++++ ++S+     L  ++ P  V+A
Sbjct: 166 LSSLASLSSASTDNLAASVTPTTVAA 191


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 107 KRLLNALRPAPVSAPLEPLCRRPAWFPL 134
           ++LLN   P   S P  PLC    W P+
Sbjct: 94  EKLLNGSIPVNFSYPENPLCFIKQWTPV 121


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 58  VLDVKLLARVSLIDDRGCVGPTGNTTAYVFGGACVLAMAAVIAVSARGVKRLLNALRPAP 117
           V  ++ L+   +    G + P   TT  V  G C+     V+      +K +  A RP  
Sbjct: 357 VFGIQQLSEFDIKQMAGNIIPAIATTNAVIAGLCITQAIKVLQGDLNDLKNIYLAKRPTR 416

Query: 118 VSAPLEPLCRRPAWFP 133
           V    E  C+   + P
Sbjct: 417 V-LHCEKTCKPNPYCP 431


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,634
Number of Sequences: 5004
Number of extensions: 20942
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 3
length of query: 138
length of database: 2,362,478
effective HSP length: 66
effective length of query: 72
effective length of database: 2,032,214
effective search space: 146319408
effective search space used: 146319408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)