GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005258-TA|BGIBMGA005258-PA|undefined
         (138 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.17 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 78  PTGNTTAYVFGGACVLAMAAVIAVSARGVKRLLNALRP-APVSAPLEP 124
           P G+  A   GGA    MAA    +AR    L NA  P    SA L+P
Sbjct: 58  PVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQP 105


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/24 (29%), Positives = 18/24 (75%)

Query: 45  QGIERRDKRQRDIVLDVKLLARVS 68
           QG+  RD + ++++LD++  A+++
Sbjct: 716 QGLVHRDVKLKNVLLDIENRAKLT 739


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/24 (29%), Positives = 18/24 (75%)

Query: 45  QGIERRDKRQRDIVLDVKLLARVS 68
           QG+  RD + ++++LD++  A+++
Sbjct: 754 QGLVHRDVKLKNVLLDIENRAKLT 777


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 91  CVLAMAAVIAVSAR 104
           C++ MAA++ V+AR
Sbjct: 7   CLVLMAAIVLVAAR 20


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 91  CVLAMAAVIAVSAR 104
           C++ MAA++ V+AR
Sbjct: 7   CLVLMAAIVLVAAR 20


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 91  CVLAMAAVIAVSAR 104
           C++ MAA++ V+AR
Sbjct: 7   CLVLMAAIVLVAAR 20


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,491
Number of Sequences: 429
Number of extensions: 1815
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 140,377
effective HSP length: 52
effective length of query: 86
effective length of database: 118,069
effective search space: 10153934
effective search space used: 10153934
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)