GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005257-TA|BGIBMGA005257-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   0.37 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   0.37 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   3.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 0.37
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 13 WWTIPAYPSPVAD 25
          +W  P YPSP+ D
Sbjct: 69 FWLSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 0.37
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 13 WWTIPAYPSPVAD 25
          +W  P YPSP+ D
Sbjct: 69 FWLSPIYPSPMVD 81


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 22  PVADMCAVRPGCAYRV 37
           PVAD+ A  PG A+ V
Sbjct: 400 PVADVAASGPGLAFLV 415


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 48  TAANLHVELDGKSLTFGIHGLCVNI 72
           T++N  VE D K    G+  +CV I
Sbjct: 86  TSSNASVEPDSKVTYSGLWRVCVAI 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 22  PVADMCAVRPGCAYRV 37
           PVAD+    PG A+ V
Sbjct: 347 PVADVAVSGPGLAFLV 362


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.142    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,578
Number of Sequences: 429
Number of extensions: 670
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.7 bits)
S2: 36 (18.6 bits)