GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005255-TA|BGIBMGA005255-PA|IPR000299|Band 4.1,
IPR001478|PDZ/DHR/GLGF, IPR000387|Tyrosine specific protein
phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region, IPR000798|Ezrin/radixin/moesin
ERM
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...   102   2e-22
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    99   1e-21
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    87   1e-17
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    30   1.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   2.8  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    29   2.8  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    29   3.7  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    28   4.8  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    28   4.8  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   6.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   8.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   8.5  

>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score =  102 bits (244), Expect = 2e-22
 Identities = 77/255 (30%), Positives = 115/255 (45%), Gaps = 33/255 (12%)

Query: 604 KNRYKDIAPYDATRVILNN--GPTGDYINASYINMPIPNSDLVLTYIATQGPLASTVGDF 661
           +NRY +I PY+ TRV L+       DYINAS + +P        T+IATQGP ++++  F
Sbjct: 52  RNRYSNIVPYENTRVRLDPMWKEACDYINASIVKIPSGK-----TFIATQGPTSNSIDVF 106

Query: 662 WQMVWES--ESSLIVMLTVVSERGRAKCHQYWP--KVGTTPLKATNALTVLTNSEQNFGH 717
           W+MVW+S  +S +IVMLT + ER R KC  YWP     T  +   + + V   +  +   
Sbjct: 107 WKMVWQSVPKSGIIVMLTKLRERHRLKCDIYWPVELFETLNIGDLSVILVKVYTLTSLNE 166

Query: 718 YIRREMTLKESSGASRNVTQLQYTAWPDHGVPEDAAAFISFTQLCSNLRNHRAVMPSSTD 777
              RE  L +  G  + +    Y  WPD G P    + +S T+   +L    +  P    
Sbjct: 167 VQVREFELNK-DGVKKKILHFYYNGWPDFGAPH-TFSLLSLTRYIKSL----SYSPD--- 217

Query: 778 EAGSEERVVEPPMVVHCSAGVVRTGXXXXXXXXXXXXXXXXXXX------XXXXVRAMRA 831
                      P++VHCSAG  RTG                             V ++R+
Sbjct: 218 -------FETAPIIVHCSAGCGRTGTFMALFEILSQTDDSTSTSKFEVDNIANIVSSLRS 270

Query: 832 QRPMCIQNSNQYKFV 846
           QR   +Q+ +Q  F+
Sbjct: 271 QRMQSVQSVDQLVFL 285


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score =   99 bits (238), Expect = 1e-21
 Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 32/206 (15%)

Query: 604 KNRYKDIAPYDATRVILNN-GPTG-DYINASYINMPIPNSDLVLTYIATQGPLASTVGDF 661
           KNRY DI PY+ TRV L    P+  DYINAS+I     N      YIA QG ++ ++ DF
Sbjct: 298 KNRYTDIVPYNCTRVHLKRTSPSELDYINASFIKTETSN------YIACQGSISRSISDF 351

Query: 662 WQMVWESESSL--IVMLTVVSERGRAKCHQYWPKVGTTPLKATNALTVLTNSEQNF--GH 717
           W MVW++  ++  IVML  + E GR  C  YWP  G    +      V   SE+N     
Sbjct: 352 WHMVWDNVENIGTIVMLGSLFEAGREMCTAYWPSNGIGDKQVYGDYCVKQISEENVDNSR 411

Query: 718 YIRREMTLKESSGAS-RNVTQLQYTAWPDHGVPEDAAAFISFTQLCSNLRNHRAVMPSST 776
           +I R+  ++ ++  S + V   QY  W D   PE+  + + F +  +N  +H        
Sbjct: 412 FILRKFEIQNANFPSVKKVHHYQYPNWSDCNSPENVKSMVEFLKYVNN--SH-------- 461

Query: 777 DEAGSEERVVEPPMVVHCSAGVVRTG 802
              GS         +VHCSAGV RTG
Sbjct: 462 ---GSGN------TIVHCSAGVGRTG 478


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 81/272 (29%), Positives = 112/272 (41%), Gaps = 42/272 (15%)

Query: 594 AASKLPHNINKNRYKDIAPYDATRVILNNGPTG--DYINASYINMPIPNSDLVLTYIATQ 651
           A+S+      KNRY DI PYD TRV L   P G  DYINAS+I+  + N      YIA Q
Sbjct: 451 ASSRSTSISRKNRYTDIVPYDKTRVRLAV-PKGCSDYINASHID--VGNKK----YIACQ 503

Query: 652 GPLASTVGDFWQMVWESE--SSLIVMLTVVSERGRAKCHQYWPKVGTTPLKATNALTVLT 709
            P   T+ DFW+MVW +   + +IVMLT + E G  KC QYWP      L     L +  
Sbjct: 504 APKPGTLLDFWEMVWHNSGTNGVIVMLTNLYEAGSEKCSQYWPDNKDHALCLEGGLRISV 563

Query: 710 NSEQNFGHY-IRREM-TLKESSGASRNVTQLQYTAWPDHGVPEDAAAFISFTQLCSNLRN 767
              + F    +   +  L + +G  + +       W D   P D  +     +    + N
Sbjct: 564 QKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDKTHP-DIESITGIIRCIDKVPN 622

Query: 768 HRAVMPSSTDEAGSEERVVEPPMVVHCSAGVVRTGXXXXXXXX---------XXXXXXXX 818
                              + PM VHCSAGV RTG                         
Sbjct: 623 -------------------DGPMFVHCSAGVGRTGTFIAVDQILQVPKNILPKTTNLEDS 663

Query: 819 XXXXXXXVRAMRAQRPMCIQNSNQYKFVCESI 850
                  V ++R+QR   +QN  Q+KF+ + +
Sbjct: 664 KDFIFNCVNSLRSQRMKMVQNFEQFKFLYDVV 695


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 590 DEPTAASKLPHNINKNRYKDIAPYDATRVILNNGPTGDYINASYINMPIPNSDL 643
           ++P  +S  P N+ K    D+AP +A   I  + P  D    + +  P P+ DL
Sbjct: 98  EKPYLSSNQPTNVYKQHQDDLAPPEADNQITRDVPISDE-KTNILFFPSPSIDL 150


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 601  NINKNRYKDIAPYDATRV--ILNNGPTGDYINASYINM-PIPNSDLVLTY 647
            +I KN + ++ P    R+  I   G    + + S+ N+ PI NSDL+L Y
Sbjct: 961  SIIKNEFSNVMPIRGARIPIIKFTGQYNIHCDLSFDNLLPIHNSDLILNY 1010


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 47  FQIEKKAKGSVLLQQVFEHLELIEKDYFGLQYTENGYPPNASNTEITRWLDSSKSVKKQI 106
           F+I+ + +G+ L+ + F+     + D+     TENGY   ASN    R  D       +I
Sbjct: 558 FRIDPRVEGNKLVAEQFKQYAT-KNDFSSAATTENGYIAVASNKGDIRLFD-------RI 609

Query: 107 GVNAQ 111
           GVNA+
Sbjct: 610 GVNAK 614


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 150 APKNTALLLASFTVQAEIGDHNDSEHSSGYLSEFRLLPKQNAEDERRIRELHKMHKGQSP 209
           APK++     + +  A +G     E S+G  SE     K+N  DE R  +     KG+  
Sbjct: 395 APKSS---FPTSSTPASVGAEKSEETSNGNKSEQE--EKENGNDETRSNDSLVSGKGKGE 449

Query: 210 ADADANFLEHAKRLDCYGVDCHPAKDYNGKDIFIGVTSIGI 250
            + D+ F   AK    Y  D   +K Y+  DI IG   I +
Sbjct: 450 ENEDSVFETRAK---IYRFDA-TSKSYS--DIGIGPLKINV 484


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 64  EHLELIEKDYFGLQYTENGYPPNASNTEITRWLDS 98
           ++  ++E+  F ++Y EN   P   N ++  WLD+
Sbjct: 177 DYTRMLEEAGFHVEYVENISRPTLLNKDVREWLDT 211


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 11/185 (5%)

Query: 48  QIEKKAKGSVLLQQVFEHLELIEKDYFGLQYTENGYPPNASNTEITRWLDSSKSVKKQIG 107
           +++   KG VL +   EHLE  E  +  L   E  Y     N+  +     S  + K  G
Sbjct: 32  ELKLNEKGGVLKEND-EHLECSES-FKKLAEKEEAYQ-TLKNSYNSLKQQHSNLLGKVSG 88

Query: 108 VNAQFWLAVRFYPPEPSRLAEEYTRYXXXXXXXXXXXDGRMVAPKNTALLLASFTVQAEI 167
           + +     ++    +   LA+   R            +   ++ + T  L A   V++  
Sbjct: 89  IKSTLGERLK---KDSQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQ--VESLT 143

Query: 168 GDHND-SEHSSGYLSEFRLLPKQNAEDERRIRELHKMHKGQSP--ADADANFLEHAKRLD 224
            D  D  + ++  + E +LL  Q+ + ERR R+ H+M +  +   AD +       +R +
Sbjct: 144 QDITDLRQQNASLVEENQLLSTQSKQWERRARDEHEMQESLAVRLADCEEQLARETERQE 203

Query: 225 CYGVD 229
            Y V+
Sbjct: 204 QYEVE 208


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 623 GPTGDYINASYINMPIPNSDLVLTYI-ATQGPLASTVGDFWQMVWESESSLIVMLTVVSE 681
           GP G Y+ +     P  N      +I A  G   +T  DF+ M+ E  +   V +  ++ 
Sbjct: 895 GPEGVYVGSILYGSPALNMLRAAHWIVAVDGHDINTFDDFYHMLLEKPTDTFVQVKQMNR 954

Query: 682 RG 683
           RG
Sbjct: 955 RG 956


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 175 HSSGYLSEFRLLPKQNAEDERRIRELHKMHKGQSPADADANFLEHAKRLDCYG 227
           H S + S   L    N++  RR+REL     G++P     +F E     D YG
Sbjct: 22  HGSSFSSRSELDNNTNSKISRRLRELVCQRMGENPLRLRQSFHETISN-DSYG 73


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 667 ESESSLIVMLTVVSERGRAKCHQYWPKV-GTTPLKAT--NALTVLTNSEQNFGHYIRREM 723
           E+   +I  LT V++   +   Q   K+  T P+     NA TV  N+   FG +IR E 
Sbjct: 190 ETTKKVIQYLTSVTDASTSDSQQLEKKILETNPVLEAFGNAQTVRNNNSSRFGKFIRIEF 249

Query: 724 T 724
           +
Sbjct: 250 S 250


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,833
Number of Sequences: 5004
Number of extensions: 124377
Number of successful extensions: 301
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 17
length of query: 870
length of database: 2,362,478
effective HSP length: 79
effective length of query: 791
effective length of database: 1,967,162
effective search space: 1556025142
effective search space used: 1556025142
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)