GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005255-TA|BGIBMGA005255-PA|IPR000299|Band 4.1,
IPR001478|PDZ/DHR/GLGF, IPR000387|Tyrosine specific protein
phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region, IPR000798|Ezrin/radixin/moesin
ERM
         (870 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   6.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   6.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 79  TENGYPPNASNTEITRWLDSSKSVKKQIGVNAQFWLAVRF-YPPEPS 124
           T   +P N + T  +  +D S  +  Q G N   W  +    PP PS
Sbjct: 725 TAGQFPTNVATTVTSMSIDQSTVI--QTGANVNLWQPLSVSIPPPPS 769


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 830 RAQRPMCIQNSNQYKFVCESIQAAYAQGFKKT 861
           R  RP+C  N   Y   CE  +AA   G   T
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAACHSGSSLT 143


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 497 QVISINGTDVEELTHEQVVQLIRTTRG 523
           QV+S++  D+  + HE ++ +I +T G
Sbjct: 499 QVLSMSDYDISNIEHEALLLVITSTFG 525


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,492
Number of Sequences: 429
Number of extensions: 8351
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 870
length of database: 140,377
effective HSP length: 64
effective length of query: 806
effective length of database: 112,921
effective search space: 91014326
effective search space used: 91014326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)