Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005254-TA|BGIBMGA005254-PA|IPR009057|Homeodomain-like,
IPR001356|Homeobox
(73 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 38 1e-05
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 38 1e-05
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 36 7e-05
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 34 2e-04
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 34 2e-04
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 34 2e-04
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 31 0.001
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 31 0.001
AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein. 26 0.054
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 20 3.6
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 19 4.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 8.2
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 37.9 bits (84), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 3 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
P +KR R T+F+ + L L F N + + L+ LG I+IWF NKR +K
Sbjct: 18 PEEKRPR-TAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIK 76
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 37.9 bits (84), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 3 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
P +KR R T+F+ + L L F N + + L+ LG I+IWF NKR +K
Sbjct: 18 PEEKRPR-TAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIK 76
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 35.5 bits (78), Expect = 7e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 7 RKRRTSFTP-QALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTV 65
+++RTS+T Q LEL F N + + +AH L I+IWF N+R K
Sbjct: 9 KRQRTSYTRYQTLEL-EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 67
Query: 66 RMMSKGMV 73
+M S +V
Sbjct: 68 KMASMNIV 75
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 34.3 bits (75), Expect = 2e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 5 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNT 64
++R R+T Q LEL F N + + +AH L I+IWF N+R LK
Sbjct: 8 RRRGRQTYTRFQTLEL-EKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 66
Query: 65 VRMMSK 70
+R + +
Sbjct: 67 LRAVKE 72
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 34.3 bits (75), Expect = 2e-04
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 3 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
P +KR R+T Q LEL F N + + +AH L I+IWF N+R K
Sbjct: 6 PERKRGRQTYTRYQTLEL-EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 64
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 33.9 bits (74), Expect = 2e-04
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 7 RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
R+ RT+FT + L L F+ + S E LA L ++IWF N+R K
Sbjct: 9 RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 64
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 31.5 bits (68), Expect = 0.001
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 7 RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
RK RT FT Q L L F + + E + L ++IWF N+R K
Sbjct: 10 RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAK 65
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 31.5 bits (68), Expect = 0.001
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 62
+KR R+T Q LEL F N + + +AH L I+IWF N+R K
Sbjct: 270 RKRGRQTYTRYQTLEL-EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 326
>AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein.
Length = 43
Score = 25.8 bits (54), Expect = 0.054
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 26 ERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVR 66
+R + + E LA LG + ++IWF N+R K ++
Sbjct: 1 QRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 41
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 19.8 bits (39), Expect = 3.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 17 ALELLNAHFERNTHPSG 33
AL +L H N HP G
Sbjct: 445 ALRILEKHELANVHPVG 461
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 19.4 bits (38), Expect = 4.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 54 FCNKRQALKNTV 65
FCN+R KN++
Sbjct: 40 FCNRRYRTKNSL 51
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 18.6 bits (36), Expect = 8.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 21 LNAHFERNTHPSGTEITGLAHQLGYEREVIRIW 53
++ H E S TE +QL Y + R +
Sbjct: 523 ISPHHEYYDSKSSTETPPSYNQLNYNENIERFF 555
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.320 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604
Number of Sequences: 429
Number of extensions: 488
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space: 3257361
effective search space used: 3257361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)
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