GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005252-TA|BGIBMGA005252-PA|undefined
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   2.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    23   8.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    23   8.7  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    23   8.7  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 45  PVDDYRLTPTYGLVLATISTLGRHA 69
           PVDD    PTY   + T S  G HA
Sbjct: 603 PVDDDSKNPTYNPAVKTSSASGVHA 627


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 23  HCVSPACRRDNTEY-LPRPSRL 43
           HC SP C +D+  Y +  P RL
Sbjct: 552 HCYSPTCAKDHPCYSISCPRRL 573


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 57  LVLATISTLGRHAGASPLWGLVIGSEVAACRRYGWAQLLYI 97
           L+L  ++ + ++ G   LW  ++  + +     G A L+Y+
Sbjct: 248 LILNNLNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYL 288


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 34  TEYLPRPSRLRPVDDYRLTPTYGLVLATISTLGRHA---GASPLWGLVIG 80
           +E  P   R   V  Y+L  T G+ +A    +G H    G +  W + IG
Sbjct: 104 SEVAPAIMRGAIVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWRISIG 153


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.139    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,766
Number of Sequences: 5004
Number of extensions: 22101
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)