GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005251-TA|BGIBMGA005251-PA|IPR009072|Histone-fold
         (148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.1  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 104 AEDIFEDASSN---FDEPAMKDKMRKE-EPPMEDA 134
           AEDIFED  S+    D   +  +  K   PP++DA
Sbjct: 51  AEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQDA 85



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 123 KMRKEEPPMEDAIDMTVENVVDLT 146
           ++RK+EPP    +  T++ +  +T
Sbjct: 466 ELRKKEPPHPIRVAKTIDVIARIT 489


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 84  LRSQLESRSPTAALKRKSSLAEDIFEDASSNFD 116
           LRSQLE    T+ + R  S    + E   S +D
Sbjct: 288 LRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWD 320


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 104 AEDIFEDASSN 114
           AEDIFED  S+
Sbjct: 51  AEDIFEDGKSD 61



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 123 KMRKEEPPMEDAIDMTVENVVDLT 146
           ++RK+EPP    +  T++ +  +T
Sbjct: 446 ELRKKEPPHPIRVAKTIDVIARIT 469


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 104 AEDIFEDASSN 114
           AEDIFED  S+
Sbjct: 51  AEDIFEDGKSD 61



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 123 KMRKEEPPMEDAIDMTVENVVDLT 146
           ++RK+EPP    +  T++ +  +T
Sbjct: 432 ELRKKEPPHPIRVAKTIDVIARIT 455


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 104 AEDIFEDASSN 114
           AEDIFED  S+
Sbjct: 51  AEDIFEDGKSD 61



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 123 KMRKEEPPMEDAIDMTVENVVDLT 146
           ++RK+EPP    +  T++ +  +T
Sbjct: 415 ELRKKEPPHPIRVAKTIDVIARIT 438


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 41  LILELIYKKLSVYASDLEVFARHA 64
           +I+E+ YKK  +        ARHA
Sbjct: 841 IIIEVAYKKHQIRKQKKMELARHA 864


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,573
Number of Sequences: 429
Number of extensions: 1251
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 148
length of database: 140,377
effective HSP length: 52
effective length of query: 96
effective length of database: 118,069
effective search space: 11334624
effective search space used: 11334624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)