GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005250-TA|BGIBMGA005250-PA|IPR012676|TGS-like,
IPR004095|TGS
         (84 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   0.52 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   6.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 0.52
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 6   KLVRIYTKPKGQLPDYNSPVVLHADRTSIEDFCNKLHRSIVKEFKYALV 54
           KL+ +Y  P+ Q  + +  V +  D    ED C      I     +AL+
Sbjct: 161 KLITMYRFPQNQFKESSLFVTIAVDVRDTEDKCKDTFAYIADVTGFALL 209


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 19  PDYNSPVVLHADR 31
           P  N P VLHA R
Sbjct: 433 PKQNKPKVLHAIR 445


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 31  RTSIEDFCN 39
           R+++ED+CN
Sbjct: 355 RSALEDYCN 363


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,672
Number of Sequences: 429
Number of extensions: 915
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 140,377
effective HSP length: 47
effective length of query: 37
effective length of database: 120,214
effective search space:  4447918
effective search space used:  4447918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)