Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005249-TA|BGIBMGA005249-PA|IPR006074|GTP1/OBG domain,
IPR005225|Small GTP-binding protein domain, IPR002917|GTP-binding
protein, HSR1-related, IPR006073|GTP1/OBG
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 284 9e-78
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 226 3e-60
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 69 6e-13
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 44 2e-05
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 42 1e-04
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 33 0.038
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 33 0.050
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 32 0.088
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 30 0.27
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 29 0.62
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.1
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 28 1.4
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 1.9
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 4.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 7.6
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 284 bits (696), Expect = 9e-78
Identities = 133/235 (56%), Positives = 167/235 (71%)
Query: 1 MARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAKTGDARIGFVGFPSV 60
MA+TQKNKATA HLG+ ELITP FDVA+TG +GF+GFPSV
Sbjct: 15 MAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSV 74
Query: 61 GKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQV 120
GKSTL++ L G SE AAYEFTTLTTVPG ++Y GAKIQ+LDLPGIIEGAKDG+GRG+QV
Sbjct: 75 GKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIEGAKDGRGRGKQV 134
Query: 121 IAVARTCSLIFIVLDVXXXXXXXXXXXXXXXXXXXXXNKQPPNIHFRKKDKGGINLNTTC 180
I VARTC+LIFIVLDV NK+PPNI F+KK++GGIN+ T
Sbjct: 135 ITVARTCNLIFIVLDVLKPMSHKRIIEEELEGFGIRLNKEPPNIVFKKKERGGINITNTV 194
Query: 181 PQSELDVEAVKTILSEYKIHNADITLRYDANSDDLIDVIEGNRIYVPCIYLLNKI 235
P + +D++ ++ + SEY++++ADI R DA DDLIDV+EGNR+Y+P +Y+LNKI
Sbjct: 195 PLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDDLIDVLEGNRVYIPALYVLNKI 249
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 226 bits (552), Expect = 3e-60
Identities = 111/235 (47%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Query: 1 MARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAKTGDARIGFVGFPSV 60
M RTQKNKAT HLG+ +L+ P FDV K+GDAR+ F+GFPSV
Sbjct: 14 MRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSV 73
Query: 61 GKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQV 120
GKSTLLS + S A+YEFTTLT +PG ++Y GA+IQ+LDLPGIIEGA G+G GRQ
Sbjct: 74 GKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGASQGRG-GRQA 132
Query: 121 IAVARTCSLIFIVLDVXXXXXXXXXXXXXXXXXXXXXNKQPPNIHFRKKDKGGINLNTTC 180
++ ART LI +VLD N+QPPN+ K GGI N T
Sbjct: 133 VSAARTADLILMVLDATKAADQREKIEYELEQVGIRLNRQPPNVTLTIKKNGGIKFNHTV 192
Query: 181 PQSELDVEAVKTILSEYKIHNADITLRYDANSDDLIDVIEGNRIYVPCIYLLNKI 235
P + +D + IL EY+IHNADI +R D DD ID++ GNR Y+ C+Y +KI
Sbjct: 193 PLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCLYCYSKI 247
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 68.9 bits (161), Expect = 6e-13
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 52 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIK------YKGAKIQLLDLPG 105
IG VG P+ GKSTLL+ L S+V YEFTT+ G IK + + +L D+PG
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPG 298
Query: 106 IIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 136
II+GA DGKG G + ++ +V+D+
Sbjct: 299 IIKGASDGKGLGYDFLRHVERAKMLCLVIDI 329
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 56 GFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108
G+P+VGKS+ ++ + +V Y FTT + G YK + Q++D PGI++
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGILD 227
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 41.5 bits (93), Expect = 1e-04
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 26/114 (22%)
Query: 49 DARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTL---------TTVPGCIK------- 92
D IGFVG PS GKST+L+ L ++ + FTT+ C +
Sbjct: 4 DILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKC 63
Query: 93 ---YKGAK-------IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 136
Y G K IQLLD+ G+I GA GKG G + + R + V+DV
Sbjct: 64 KPIYGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDV 117
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 33.1 bits (72), Expect = 0.038
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 52 IGFVGFPSVGKSTLLSNLA-----GVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
+G +G+P+VGKS++++ L G + A +TT +K K++L+D PGI
Sbjct: 272 VGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSLREVKLDN-KLRLVDSPGI 330
Query: 107 IEGAKDGK 114
+ + D K
Sbjct: 331 VFPSSDSK 338
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 32.7 bits (71), Expect = 0.050
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 51 RIGFVGFPSVGKSTLLSNLA-GVYSEVAAYEFTTL------TTVPG------CIKYK--- 94
+ G VG P+VGKST + V A Y + T+ VP C YK
Sbjct: 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 95 --GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 134
A + + D+ G+ +GA G G G ++ R I+ V+
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 31.9 bits (69), Expect = 0.088
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 53 GFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107
G VG+P+VGKS+ ++ L G S+ + T T K+ LLD PG++
Sbjct: 305 GLVGYPNVGKSSTINALVG--SKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLV 357
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 51 RIGFVGFPSVGKSTLLSNLAGV-YSEVAAYEFTTLTTV 87
+IG VG P++GKSTL L A Y F T+ V
Sbjct: 47 KIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPV 84
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.1 bits (62), Expect = 0.62
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 164 IHFRKKDKGGINLNTTCPQSELDVEAVKTILSEYKIHNADI-TLRYDANSDDLIDVIEGN 222
+H +K+DK + + + +S++ +A I KI + ++ ++ + DD+ D++ +
Sbjct: 441 VHIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSKRDDIYDIL--S 498
Query: 223 RIYVPCIYLLNKI 235
R P IY ++ +
Sbjct: 499 RSLAPSIYEMDDV 511
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 52 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111
+ +G P GKSTL+ +L YS+ + T TV + K +I L+ P +
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITV---VAGKKRRITFLECPNDLSSMI 133
Query: 112 D 112
D
Sbjct: 134 D 134
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 52 IGFVGFPSVGKSTLLSNLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110
+ +G S GKSTLL+NL G +S + A + T K + I ++D+ G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSKANNSPILVMDVEG----- 96
Query: 111 KDGKGRG 117
DG+ RG
Sbjct: 97 TDGRERG 103
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 48 GDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIK--------YKGAKIQ 99
G + FVG P+ GKS++L++L V + + + PG K + +
Sbjct: 144 GRVYVYFVGMPNTGKSSILNSLRNV--ALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVY 201
Query: 100 LLDLPGII 107
+LD PGI+
Sbjct: 202 MLDTPGIM 209
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 52 IGFVGFPSVGKSTLLSNL 69
+G +GFP+ GKS++++ L
Sbjct: 313 VGLIGFPNAGKSSIINTL 330
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 168 KKDKGGINLNTTCPQSELDVEAVK--TILSEYKI 199
+KDKG IN N T PQ++ E++K TI +E K+
Sbjct: 1589 RKDKG-INNNQTSPQNKPSKESLKSDTISNEKKV 1621
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 49 DARIGFVGFPSVGKSTLLSNLAGV 72
D+R+ VG GKSTLL+ + G+
Sbjct: 416 DSRVAIVGKNGTGKSTLLNLITGL 439
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 44 VAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98
+++ IG +G + GKST++ ++GV++ E T+ + Y AKI
Sbjct: 18 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIK--LGYANAKI 70
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 43 DVAKTGDARIGFVGFPSVGKSTLLSNL 69
D+ D+RIG VG GKST+L L
Sbjct: 538 DIDVQMDSRIGVVGPNGAGKSTMLKLL 564
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.139 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 879,377
Number of Sequences: 5004
Number of extensions: 30503
Number of successful extensions: 111
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 21
length of query: 244
length of database: 2,362,478
effective HSP length: 71
effective length of query: 173
effective length of database: 2,007,194
effective search space: 347244562
effective search space used: 347244562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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