GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005249-TA|BGIBMGA005249-PA|IPR006074|GTP1/OBG domain,
IPR005225|Small GTP-binding protein domain, IPR002917|GTP-binding
protein, HSR1-related, IPR006073|GTP1/OBG
         (244 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 44 VAKTGDARIGFVGFPSVGKSTLLSNLAGV 72
          +++     IG +G  + GKST++  ++GV
Sbjct: 37 ISRQATINIGTIGHVAHGKSTIVKAISGV 65


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 76   VAAYEFTTLTTVPGCI 91
            VA YEF TLT   G I
Sbjct: 1544 VAEYEFATLTVTGGTI 1559


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 186 DVEAVKTILSEYKIHNADITLRYDANSDDLI 216
           ++E     L++YK  + D+TL  D +  + I
Sbjct: 660 NIEGTSYFLNDYKHKDVDVTLPLDLHIQNAI 690


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.139    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,787
Number of Sequences: 429
Number of extensions: 2266
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 140,377
effective HSP length: 56
effective length of query: 188
effective length of database: 116,353
effective search space: 21874364
effective search space used: 21874364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)