GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005248-TA|BGIBMGA005248-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (254 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...   133   2e-33
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    29   0.031
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.031
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score =  133 bits (321), Expect = 2e-33
 Identities = 82/248 (33%), Positives = 125/248 (50%), Gaps = 17/248 (6%)

Query: 3   HWKNKAAIVTGAGQGIGAQITEDLIKAGMTVIGFEPTQAKLTPLFNLADKYSELNNQLIP 62
           +W ++ A+VTGA  GIG  + E L+  GM VIG  P   K+     L ++      +L+P
Sbjct: 4   NWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK---TLVEELKSKPGKLVP 60

Query: 63  CKCDISNDNDLKNAFEGIVKLYGGVDLLVNNAAIGKAGMISTGNLEDLNNVIDVNIYGLI 122
            +CD+SN ND+    E + K  G +D+L+NNA I     +    + D   + D+N+ GL 
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 123 ACSRHAIDSMKNKG--KGHIVNVNSICGHYMPSFSEPVMNVYIASKRSMTVFTKTLREEL 180
              +  +  MK KG   G IVN+N   G  +   +      Y+ASK ++T  T  LR EL
Sbjct: 121 CMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRN-RPAYLASKCALTTLTDCLRSEL 179

Query: 181 KMINSKIKITSVSPGIVKTGIFKSAGVGFIDDAFFCDNSHLTV--KDVSEVILMILSSPR 238
               S IK+ S+SP +V+T +            +  +NS L +  KDVS  +L  L +P 
Sbjct: 180 AQCESNIKVISISPDLVETDMTAQ---------WLKENSRLALKPKDVSNCVLFALQTPD 230

Query: 239 TVNITEII 246
            V I E++
Sbjct: 231 NVLIKELV 238


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 140 IVNVNSICGHYMPSFSEPVMNVYIASKRSMTVFTKTLREEL 180
           ++N  ++   Y+PS S   + + I++  SMTVF  T+RE L
Sbjct: 226 LINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESL 266


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 158 VMNVYIASKRSMTVFTKTLREELKMINSKIKITSVSPGIVKTGIFK 203
           V   Y+  K+ MTVF +TL     M+ S  K+T  +P + ++ ++K
Sbjct: 648 VFEPYLEGKQQMTVFQRTL-----MVGSLGKLTETNPKLARSVLYK 688


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 44 TPLFNLADKYSELNNQLIPCKCDISN-DNDLKNAF 77
          TP+ N+     E  NQL P   D  N    LK+ F
Sbjct: 31 TPIKNVYKNNIETKNQLSPFNIDTPNRQKILKDGF 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,655
Number of Sequences: 429
Number of extensions: 2987
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 254
length of database: 140,377
effective HSP length: 56
effective length of query: 198
effective length of database: 116,353
effective search space: 23037894
effective search space used: 23037894
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)