GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005247-TA|BGIBMGA005247-PA|undefined
         (71 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   0.53 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   0.93 
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    22   8.6  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    22   8.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    22   8.6  

>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 5   YYETDFLLPELNPPCTVRVIG 25
           +YE D +L  LNP C   V+G
Sbjct: 198 FYEKDAILSLLNPTCVCPVVG 218


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 5    YYETDFLLPELNPPCTV 21
            Y+E D+LLP+ N  C++
Sbjct: 1673 YHEADWLLPQQNEKCSI 1689


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 11  LLPELNPPCTVRVIGKM 27
           L+  LN P T +++GKM
Sbjct: 493 LIQNLNSPRTPKIVGKM 509


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 34  LHAFNIRLATGDDIATLSRRAAVAAHHI 61
           ++AF+IRL    D  TL RR      +I
Sbjct: 134 INAFDIRLMLVTDFDTLKRRREARTGYI 161


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 12  LPELNPPCTVRVIGKMMPGACRLHAFNIRLATGDDI 47
           +P+L P  T  V   +   AC   A    +ATG DI
Sbjct: 195 IPDLFPEDTAGVPMSLFVWACAGGAIGAPMATGVDI 230


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,342
Number of Sequences: 5004
Number of extensions: 8682
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 2,362,478
effective HSP length: 51
effective length of query: 20
effective length of database: 2,107,274
effective search space: 42145480
effective search space used: 42145480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)