GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005247-TA|BGIBMGA005247-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   3.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 56  VAAHHIAKLCKENAIA 71
           V  H+I+ LCKE  I+
Sbjct: 126 VRDHNISALCKELGIS 141


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 2   QIVYYETDFLL 12
           Q ++Y TDF++
Sbjct: 335 QCLFYNTDFII 345


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936
Number of Sequences: 429
Number of extensions: 494
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.9 bits)
S2: 36 (18.6 bits)