Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005246-TA|BGIBMGA005246-PA|undefined
(144 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 32 0.039
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 28 0.49
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 1.5
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 26 2.0
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 2.6
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 3.4
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 3.4
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 4.5
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 6.0
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.0
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 24 7.9
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 24 7.9
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 31.9 bits (69), Expect = 0.039
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 64 AGSEMTRQQLKFKQIDDQKAKDLKMMKRENQQEIRQNNEVVGDSGSL-YTKVRE 116
A + T Q L + I+ K +K M E +QEI N E++ S ++ T VRE
Sbjct: 107 ANKKYTVQFLDYPDIETVSLKHIKAMPEEKRQEIEGNKEILKKSTTIRSTPVRE 160
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 0.49
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 71 QQLKFKQIDDQKAKDLKMMKRENQQEIRQNNEVVGDSGSLYTKVREAKPPSPYNKLITRY 130
+Q KF +I Q+AK+L + E ++ + +NN +L+T+++E S + + +
Sbjct: 331 EQQKFVEIASQRAKELDVYMEEFKRSLTENNGFT----TLFTELKEKNSISELSPSLQKT 386
Query: 131 SRLGKRNFA 139
+ N A
Sbjct: 387 IEWARVNLA 395
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 62 PSAGSEMTRQQLKFKQIDDQKAKDLKMMKRENQQEIRQNNEVVGDSG 108
P +T + +Q + +K + +K +K+E I+++NE GDSG
Sbjct: 436 PPKRKRITTRASYDRQKEQRKKEYIKKVKKE--ASIKKHNEATGDSG 480
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 22 SGHTVQSERGPIPAYGTEYK-----YRNVTGQERYQLHEVIGGPKPSAGSEMTRQQLKFK 76
+GH + E+GP+P + +E + Y +++ + GP +A + R+Q +FK
Sbjct: 20 TGHEIDLEKGPLPEHNSEGESTLPPYSDISKLANLVPEDSSTGPTETANPNVERRQ-EFK 78
Query: 77 QI 78
+
Sbjct: 79 DL 80
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 59 GPKPSAGSEMTRQQLKFKQIDDQKAKDLKMMKRENQQEIRQN 100
GP GSE + L++ + ++ ++ D+K K + QN
Sbjct: 155 GPWAGYGSEQSSSPLEYSEYEEVESLDVKSEKDTESNNLGQN 196
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 3.4
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 42 YRNVTGQERYQLHEVIGGPKPSAGSEMTRQQLKFKQIDDQKAKDLKMMKRENQQE---IR 98
Y VT QE + + +P A + T + D Q+ +D K + QQE +R
Sbjct: 190 YSKVTQQEPQAGQKAVP-QEPQANQQETSSNQEESSFDRQETQDDKQKPKTTQQEHYNLR 248
Query: 99 QNNEVVGDSGSLYTKVREAK 118
N+ + + + R +K
Sbjct: 249 NRNQATITNSNSKPQTRRSK 268
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 76 KQIDDQKAKDLKMMKRENQQEIRQNNEVVGDSGSLYTKVRE 116
K + Q+A L ++K+ +Q NN ++ DS S+ + +E
Sbjct: 378 KSLPVQRASVLPIIKQSSQTSPVSNNSMIRDSESIINERKE 418
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 74 KFKQIDDQKAKDLKMMKRENQQEIRQNNEVVGDSGSLYT 112
K K++D+Q +K MK+ +QQ Q N DS + +T
Sbjct: 227 KHKRLDEQLLNSVKSMKKVSQQLKPQKN--TNDSNNDHT 263
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 56 VIGGPKPSAGSEMTRQQLKFKQIDDQKAKDLKMMKR 91
V GP S + K+K +D + KDL+ KR
Sbjct: 760 VAKGPNKGLKSRPKGVKGKYKMVDSRMKKDLRAQKR 795
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 8 YLANYADSGAHFIVSGHTVQSERGPIPAYGTE 39
YLA A + +V G TV RGP+ G E
Sbjct: 85 YLAEEAKAKGVSVVLGPTVNIHRGPLNGRGFE 116
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 60 PKPSAGSEMTRQQLKFKQIDDQ 81
P+P AGS + R KFK + D+
Sbjct: 201 PQPQAGSHVIRDIHKFKHLLDE 222
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 26 VQSERGPIPAYGTEYKYRNVTGQERYQLH 54
VQS+R + YG +Y +V R +H
Sbjct: 93 VQSQRAMVEVYGAKYMSLHVRKSNRAAIH 121
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,214
Number of Sequences: 5004
Number of extensions: 26057
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 12
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)
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