GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005246-TA|BGIBMGA005246-PA|undefined
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 121 SPYNKLITRY----SRLGKRNFALQNPL 144
           +PYNK  T++     RL K+N A +N L
Sbjct: 444 TPYNKNYTKFCSTEKRLTKQNTAFENQL 471


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 63 SAGSEMTRQQLKFKQIDDQKAKDLKMMKRENQ 94
          S   ++TR  ++   I  QK   LK+ K  NQ
Sbjct: 68 STNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 99


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 63 SAGSEMTRQQLKFKQIDDQKAKDLKMMKRENQ 94
          S   ++TR  ++   I  QK   LK+ K  NQ
Sbjct: 51 STNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 82


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
          receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 44 NVTGQERYQLHEVIGGPKPSAG 65
          N   +E   L+++  GP+ S+G
Sbjct: 41 NTVHEEESSLNDLFSGPEESSG 62


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 109 SLYTKVREAKPPSPYNK 125
           S   KV   KPP P  K
Sbjct: 240 SFVRKVHATKPPKPQTK 256


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,660
Number of Sequences: 429
Number of extensions: 2599
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)