GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005244-TA|BGIBMGA005244-PA|undefined
         (281 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 118 IKVKEEERKKQKLNKDGERRQSLAEFANKKTLRR 151
           +K  EEE+KK K +      QS  E   K T R+
Sbjct: 534 MKETEEEKKKTKQSLSPSENQSKMEILPKTTQRQ 567


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 133 DGERRQSLAEFANKKTLRRESSKFSLQLFQIAESLVGN 170
           +G+R  SL E AN+  ++ ++   + +L ++   L GN
Sbjct: 32  NGKRSTSLEELANRNAIQSDNVFANCELQKLRLLLQGN 69


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 173 EKKTRRQNRPYTRGESTNSYLSEKKTHTDVSASASIGETSLVEPRLVKRKSVAKL 227
           E++T R+    +R    NSY +EK+       S           R  +RK ++ L
Sbjct: 31  EERTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSL 85


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 173 EKKTRRQNRPYTRGESTNSYLSEKKTHTDVSASASIGETSLVEPRLVKRKSVAKL 227
           E++T R+    +R    NSY +EK+       S           R  +RK ++ L
Sbjct: 31  EERTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSL 85


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 173 EKKTRRQNRPYTRGESTNSYLSEKK 197
           E++T R+    +R    NSY +EK+
Sbjct: 31  EERTSRKRYSRSREREQNSYKNEKE 55


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,832
Number of Sequences: 429
Number of extensions: 2956
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 281
length of database: 140,377
effective HSP length: 57
effective length of query: 224
effective length of database: 115,924
effective search space: 25966976
effective search space used: 25966976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)