GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005243-TA|BGIBMGA005243-PA|undefined
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   1.1  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    24   5.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    23   9.8  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    23   9.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    23   9.8  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 5   VDSRNLISNYMKVIKRASKGLLT 27
           +D R L++   KVI  AS+G+LT
Sbjct: 333 LDKRPLLAKIFKVIHHASRGILT 355


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 50  KPTGQWRPSNGGITIHTRQDNLYGRGVRNLGDQIPPKM 87
           K T + RP+   + + T+    Y     NL    PPK+
Sbjct: 135 KYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKV 172


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 44  VAHPARKPTGQWRPSNGGITIHTRQDNLYGRGVRNLGDQIPPKMLVQKA 92
           V + + KP   W PS+  +   ++  ++ G    N+ D +PP  +++KA
Sbjct: 95  VRNMSNKPPLTWSPSSANLFGTSKVTSIIG---NNVSDVVPP--VIKKA 138


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 30  HLHAPDGGGEQQVAVAHPARKPTGQWRPSNGGITIHTRQDN 70
           H H+ D  G+     A     P  + RP +    +  R DN
Sbjct: 421 HKHSRDASGDSTKGFAEHMPAPARRRRPQSTASFVTYRSDN 461


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 32  HAPDGGGEQQVAVAHPARKPTGQWRPSNGGITIHTRQDNLYGRGVRN------LGDQIPP 85
           H  +  GE   A  +   +P     P+ GG+T    + +      RN      L D +PP
Sbjct: 685 HVEELSGENMFACENCCNQPNEVGSPAKGGLTSDNDKYSFNNSVYRNAYKRMLLDDPLPP 744

Query: 86  KMLV 89
             ++
Sbjct: 745 VFII 748


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,815
Number of Sequences: 5004
Number of extensions: 18532
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)