GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005242-TA|BGIBMGA005242-PA|undefined
         (142 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036920-1|AAH36920.1|  348|Homo sapiens CHD8 protein protein.         29   4.3  

>BC036920-1|AAH36920.1|  348|Homo sapiens CHD8 protein protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 77  PLTTMSDSSERLCTAKPPREETINEEAKSDDSLGSIETVKHFGL---PILSVSGPSPPDE 133
           P+TT S ++ RL   +P  ++  +EE   D S G   + + F L   PI+  +  S  D 
Sbjct: 287 PVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPIMPANSDSSEDA 346

Query: 134 D 134
           D
Sbjct: 347 D 347


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,867,094
Number of Sequences: 224733
Number of extensions: 937115
Number of successful extensions: 1985
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1985
Number of HSP's gapped (non-prelim): 1
length of query: 142
length of database: 73,234,838
effective HSP length: 83
effective length of query: 59
effective length of database: 54,581,999
effective search space: 3220337941
effective search space used: 3220337941
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)