GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005241-TA|BGIBMGA005241-PA|IPR008957|Fibronectin, type
III-like fold, IPR003961|Fibronectin, type III
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    35   8e-05
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.15 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.15 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   0.82 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   7.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 35.1 bits (77), Expect = 8e-05
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 30  PGVPENITVTFLNPTTVKVSWSTTADLVEKYDVTYK 65
           P  P+N+TV F++ +TV +SW+    L  + D TY+
Sbjct: 318 PSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYR 353



 Score = 25.0 bits (52), Expect = 0.088
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 30  PGVPENITVTFLNPTTVKVSWSTT-------ADLVEKYDVTYKP 66
           P +  N+ +T +  + + +SW          +DLVE+Y+V   P
Sbjct: 419 PSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYEVRCYP 462


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 30   PGVPENITVTFLNPTTVKVSWSTTAD---LVEKYDVTYKPSDAR 70
            PG P +I V   +P  + +SW    +   ++ KY++  +  D R
Sbjct: 1214 PGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGR 1257



 Score = 20.2 bits (40), Expect = 2.5
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 33   PENITVTFLNPTTVKVSWSTTAD-----LVEKYDVTYKP 66
            PE++    L   +++VSW    +     +++ Y + Y+P
Sbjct: 1115 PEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEP 1153



 Score = 19.0 bits (37), Expect = 5.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 36  ITVTFLNPTTVKVSWSTTADLVEKYDVT 63
           +TVT+L    ++++ ST   +  K +VT
Sbjct: 837 VTVTWLKGGKIELNPSTNYRVTVKREVT 864



 Score = 18.6 bits (36), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 31   GVPENITVTFLNPTTVKVSWS 51
            G P N+    L+ + + ++WS
Sbjct: 1008 GPPINLEARALSSSEILITWS 1028


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 30   PGVPENITVTFLNPTTVKVSWSTTAD---LVEKYDVTYKPSDAR 70
            PG P +I V   +P  + +SW    +   ++ KY++  +  D R
Sbjct: 1210 PGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGR 1253



 Score = 20.2 bits (40), Expect = 2.5
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 33   PENITVTFLNPTTVKVSWSTTAD-----LVEKYDVTYKP 66
            PE++    L   +++VSW    +     +++ Y + Y+P
Sbjct: 1111 PEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEP 1149



 Score = 19.0 bits (37), Expect = 5.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 36  ITVTFLNPTTVKVSWSTTADLVEKYDVT 63
           +TVT+L    ++++ ST   +  K +VT
Sbjct: 833 VTVTWLKGGKIELNPSTNYRVTVKREVT 860



 Score = 18.6 bits (36), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 31   GVPENITVTFLNPTTVKVSWS 51
            G P N+    L+ + + ++WS
Sbjct: 1004 GPPINLEARALSSSEILITWS 1024


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 0.82
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 51  STTADLVEKYDVTYKPS 67
           STTAD++++ +  Y PS
Sbjct: 345 STTADVLQEEEEEYSPS 361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 31  GVPENITVTFLNPTTVKVSW 50
           G P +I V  L+  T+KV+W
Sbjct: 978 GPPTSIRVDDLDQHTLKVTW 997


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 32  VPENITVTFLNPTTVKVSWSTT 53
           V  N+T T   PTT  +S S T
Sbjct: 831 VVTNVTTTINTPTTSVISMSGT 852


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 30  PGVPENITVTFLNPTTVKVSWSTT 53
           PG P   T+T +  TT   + +TT
Sbjct: 651 PGAPAT-TITTITTTTTTTTTTTT 673


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 34  ENITVTFLN 42
           EN+TVTF N
Sbjct: 134 ENMTVTFAN 142


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 34  ENITVTFLN 42
           EN+TVTF N
Sbjct: 134 ENMTVTFAN 142


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 36  ITVTFLNPTTVKVSWSTTADLVEKYDVTY 64
           + +  L+P   K++   T D+ +  ++T+
Sbjct: 591 VWINCLDPNLPKLALFATKDIKQNEEITF 619


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 42  NPTTVKVSWSTTADLVEKY 60
           NP  V++ W    + + K+
Sbjct: 329 NPICVQIPWDKNVEALAKW 347


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057
Number of Sequences: 429
Number of extensions: 365
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)