GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005240-TA|BGIBMGA005240-PA|IPR013772|Alpha-amylase,
IPR006047|Glycosyl hydrolase, family 13, catalytic region,
IPR006048|Alpha-amylase, C-terminal all beta, IPR006589|Glycosyl
hydrolase, family 13, subfamily, catalytic region
         (500 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           620   e-180
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    42   2e-05
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    38   3e-04
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   7.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  620 bits (1531), Expect = e-180
 Identities = 284/492 (57%), Positives = 357/492 (72%), Gaps = 13/492 (2%)

Query: 5   ILLLSAVTLA---LAYKNPHYASGRTTMVHLFEWKWDDIAAECERFLGPRGFGGIQVSPP 61
           +LLL+ +TLA   +A+ +PH+A G   +VHLFEWKW+DIA ECE+FLGP GFGG+QVSP 
Sbjct: 6   VLLLALLTLAAGEIAHNDPHFAPGHDAIVHLFEWKWNDIAKECEQFLGPVGFGGVQVSPV 65

Query: 62  NENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRCNNVGVRIYVDAIINHMTGT 121
            EN+VI    RPWWERYQPISY+ +TRSG   QF +MV RCN  GVRIYVD I+NHM+G 
Sbjct: 66  QENIVI--DKRPWWERYQPISYKWITRSGTREQFIDMVARCNKAGVRIYVDVIMNHMSGD 123

Query: 122 WNENVGTGGSTADFGNWHYPAVPYGRNDFNWPHCVITGNDYNCCPDRVRNCELSGLKDLN 181
            N+  GTG S A+  N+ YP VPY   +F+ P C +  N+YN  P  VRNCEL GL DL+
Sbjct: 124 RNDAHGTGNSRANTYNFDYPQVPYTVKNFH-PRCAV--NNYND-PSNVRNCELVGLHDLD 179

Query: 182 QGSDYVRQQILNYMNRLIDMGVAGFRIDAAKHMWPHDLRVIYDRLRNLNTAHGFPSGARP 241
           Q  +YVR ++++++N L+ +GVAGFR+DAAKHMWP DLR IY R+RNLN  HGFP+ A+P
Sbjct: 180 QSQEYVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVRNLNRTHGFPNDAQP 239

Query: 242 YIYQEVIDLGGEAISRNEYTPLAAVTEFRFGLELSQAFQRRNQLRWLVNWGPQWGLLASG 301
           YI+QEVID G EAIS+ EY  + AV EF++  E+S AF+  N L+WLVNWG QWG L S 
Sbjct: 240 YIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLKWLVNWGEQWGFLPSK 299

Query: 302 DALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSFAFTDTEAGP 361
           D+L F+DNHD QR +     ILTYK S++YK A+AFML+HP+G P++MSSF F   + GP
Sbjct: 300 DSLVFVDNHDTQRDN---PQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFDFQSKDQGP 356

Query: 362 PMNSRGDITSPTINADNSCGNGWICEHRWRQIHNMVVFRNTAGNGALTNWWDNGSNQIAF 421
           P +  G+I SP+I+ DN C NGWICEHRWRQI+NMV FRN      + NWWDNGSNQIAF
Sbjct: 357 PNDGNGNILSPSIH-DNICSNGWICEHRWRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAF 415

Query: 422 CRGNQAFIAFNNDAWDMDQTLQTCLPAGTYCDIISGARSGNRCTGKSIVVGSDGRARIIH 481
            RG   F+AFN D +D+ + L+ CLP G YCD+ISG     RCTGK + VGSDG A I  
Sbjct: 416 SRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEI 475

Query: 482 RSNEYDMMVAIH 493
            + E D ++AIH
Sbjct: 476 GAGEEDGVLAIH 487


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 41.5 bits (93), Expect = 2e-05
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 90  GNENQFSNMVRRCNNVGVRIYVDAIINHMTGT--W-NENVGTGGSTADFGNWHYPAVPYG 146
           G    F  +VRR  ++G+++ +D + NH +    W  ++V       ++  W    +  G
Sbjct: 97  GTLADFDRLVRRAKSLGLKVILDFVPNHSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNG 156

Query: 147 RND--FNWPHCVITGNDYNCCPDRVR---NCELSGLKDLNQGSDYVRQQILNYMNRLIDM 201
                 NW   V  G+ +    +R +   +   +G  DLN  S  + Q++ N +   ++ 
Sbjct: 157 TRQPPNNWLS-VFWGSAWQWNEERKQYYLHQFATGQPDLNYRSAALDQEMKNVLTFWMNR 215

Query: 202 GVAGFRIDAAKHMWPHDLRVI 222
           GV GFRIDA  HM+  D R++
Sbjct: 216 GVDGFRIDAINHMF-EDARLL 235


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 37.5 bits (83), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 179 DLNQGSDYVRQQILNYMNRLIDMGVAGFRIDAAKHMW 215
           DLN  +  VR+++ N M   +D G+ GFRIDA  H++
Sbjct: 200 DLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLF 236


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 90  GNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGN---WHYPAVPYG 146
           G  +   N+V   +  G++I +D + NH +        +  +   + N   WH   +  G
Sbjct: 97  GTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNG 156

Query: 147 RN--DFNWPHCVITGNDYNCCPDRVR---NCELSGLKDLNQGSDYVRQQILNYMNRLIDM 201
           +     NW   V  G+ ++   +R     +       DLN  +  V   + N +   +  
Sbjct: 157 KRVPPTNWVG-VFGGSAWSWREERQAYYLHQFAPEQPDLNYYNPVVLDDMQNVLRFWLRR 215

Query: 202 GVAGFRIDAAKHMWPHDLRVIYDRL 226
           G  GFR+DA  ++   D+R + + L
Sbjct: 216 GFDGFRVDALPYIC-EDMRFLDEPL 239


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 90  GNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGN---WHYPAVPYG 146
           G  +   N+V   +  G++I +D + NH +        +  +   + N   WH   +  G
Sbjct: 97  GTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNG 156

Query: 147 RN--DFNWPHCVITGNDYNCCPDRVR---NCELSGLKDLNQGSDYVRQQILNYMNRLIDM 201
           +     NW   V  G+ ++   +R     +       DLN  +  V   + N +   +  
Sbjct: 157 KRVPPTNWVG-VFGGSAWSWREERQAYYLHQFAPEQPDLNYYNPVVLDDMQNVLRFWLRR 215

Query: 202 GVAGFRIDAAKHMWPHDLRVIYDRL 226
           G  GFR+DA  ++   D+R + + L
Sbjct: 216 GFDGFRVDALPYIC-EDMRFLDEPL 239


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 218 DLRVIYDRLRNLNTAHGFPSGAR 240
           +LR+I + ++++NT H   +G +
Sbjct: 213 ELRIILEDIKHINTRHNTKNGMK 235


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 403 AGNGALTNWWDNGSNQIAFCRGNQAFIAFNNDAWDMDQTLQ 443
           A   ALT   D   +++A C  N   I+ + D  + D T Q
Sbjct: 163 ASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQ 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,670
Number of Sequences: 429
Number of extensions: 7380
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 12
length of query: 500
length of database: 140,377
effective HSP length: 61
effective length of query: 439
effective length of database: 114,208
effective search space: 50137312
effective search space used: 50137312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)