Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005239-TA|BGIBMGA005239-PA|IPR013772|Alpha-amylase,
IPR006047|Glycosyl hydrolase, family 13, catalytic region,
IPR006589|Glycosyl hydrolase, family 13, subfamily, catalytic region
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 51 2e-07
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 43 6e-05
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 40 6e-04
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 38 0.003
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 34 0.029
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.088
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 31 0.35
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 28 1.9
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 27 4.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 5.8
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 26 7.6
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 51.2 bits (117), Expect = 2e-07
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 41 WKDIADECERFLAPKGFGGVQVSPPSENVIIRLSDGTRPWYERYQVMS-YKLITRSGNQD 99
W+ I D+ + ++ GF + +SP +N+ R G Y Y Y L G +
Sbjct: 64 WRGIIDKLD-YIQGMGFTAIWISPIIKNIEGRTKYGEA--YHGYWPQDLYTLNPHFGTEQ 120
Query: 100 EFLNMTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYKEYSYPAVPYTRDHFHHP 159
+ +++ +D G+ + D V+NHM S + ++ G Y+ P+ + +HP
Sbjct: 121 DLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYG----IYR-------PFNQSSHYHP 169
Query: 160 SCSINNYNDAAQVRAC----DLVGLKDLNHNLPYVRDKIVEYLNKLI-ALGVAGFRVDAA 214
C I + + C + + L D++ P + + + +++ + + G RVDA
Sbjct: 170 MCPIEQ-DKPLSLEQCWIGTEDMTLPDIDTENPQIIETLYNFIHDQVKQFKIDGLRVDAT 228
Query: 215 KHM----WP 219
KH+ WP
Sbjct: 229 KHVRRTFWP 237
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 43.2 bits (97), Expect = 6e-05
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 22/184 (11%)
Query: 41 WKDIADECERFLAPKGFGGVQVSPPSENVIIRLSDGTRPWYERYQVMS-YKLITRSGNQD 99
W I + + ++ GF + +SP ENV DG+ Y Y + Y+L G ++
Sbjct: 68 WNGIRNHLD-YIQGMGFDAIWISPIFENVEGNDIDGSS--YHGYWTTNLYELNHHFGTKE 124
Query: 100 EFLNMTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYKEYSY-PAVPYTRDHFHH 158
EF+ + + + I I DV IN M + ++ S+ +P+ F H
Sbjct: 125 EFMELIQELHKRDIWILLDVAINSMAIN-----------GPLEQMSFEKVIPFNDASFFH 173
Query: 159 PSCSIN-NYNDAAQVRACDL----VGLKDLNHNLPYVRDKIVEYLNKLI-ALGVAGFRVD 212
P C ++ ND V+ C L + L D++ V + +++ ++ + G R D
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGIRFD 233
Query: 213 AAKH 216
A KH
Sbjct: 234 AIKH 237
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 39.9 bits (89), Expect = 6e-04
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 84 YQVMSYKLI-TRSGNQDEFLNMTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYK 142
Y V YK I +R G ++ + + ++ +++ D+V+NH + + + S N K
Sbjct: 71 YDVSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPK 130
Query: 143 E--YSYPAVPYTRDHFHHPSCSINNYND--------AAQVRACDL--VGLKDLNHNLPYV 190
Y + Y P + +Y D A Q L VG DLN P V
Sbjct: 131 RDWYFWKPARYNEKGERLPPNNWRSYFDTSAWEWDEATQEYYLHLWSVGQPDLNWETPKV 190
Query: 191 RDKIVEYLNKLIALGVAGFRVDA 213
R+ + + L + GV GFR+DA
Sbjct: 191 REAVHDILRFWLDRGVDGFRLDA 213
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 37.5 bits (83), Expect = 0.003
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 20/183 (10%)
Query: 41 WKDIADECERFLAPKGFGGVQVSPPSENVIIRLSDGTRPWYERYQVMSY-KLITRSGNQD 99
W+ I + + ++ G V +SP +N I G Y Y +L G +
Sbjct: 58 WRGIIQKLD-YIQSLGCTAVWISPIVKN--IEGVTGYGEAYHGYWAEDLTQLNPHFGTKQ 114
Query: 100 EFLNMTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYKEYSYPAVPYTRDHFHHP 159
+ + + + + D+V+NHM G S +Y +Y+ P+ +HP
Sbjct: 115 DLTELVDQLHKRNMLCMIDIVVNHMAH-------AGDSPIDYSKYA----PFNSPSHYHP 163
Query: 160 SCSINNYNDAAQVRAC----DLVGLKDLNHNLPYVRDKIVEYLNKLI-ALGVAGFRVDAA 214
++NY+D ++V L D+ V + ++ LI G R+D A
Sbjct: 164 KRFLHNYDDTWDCEIAWLGDEVVSLMDIRTEDQEVHNFFQNWIRDLIQTYHFDGLRIDTA 223
Query: 215 KHM 217
KH+
Sbjct: 224 KHV 226
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 34.3 bits (75), Expect = 0.029
Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 18/182 (9%)
Query: 41 WKDIADECERFLAPKGFGGVQVSPPSENVIIRLSDGTRPWYERYQVMSYKLITRSGNQDE 100
WK I + ++ G + +SP +N I +D + ++ + +L G +++
Sbjct: 53 WKGITRNLD-YIKSLGCTAIWISPIVKN-ISETTDCGQAYHGYWAQDMTQLNENFGTEED 110
Query: 101 FLNMTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYKEYSYPAVPYTRDHFHHPS 160
+ ++ + D+V+NHM G N+ Y P+ ++H
Sbjct: 111 LKELVNAIHEKNMLCMVDIVVNHMGH-------AGSKPVNFLLYQ----PFNSGKYYHNW 159
Query: 161 CSINNYNDAAQVRACDL----VGLKDLNHNLPYVRDKIVEYLNKLI-ALGVAGFRVDAAK 215
+ NY+D + L V L D+ VR +++ LI G R+D AK
Sbjct: 160 QFVQNYDDPHETITGWLGDSHVNLPDIRTEKNEVRKFFQNWVSDLIKRYQFDGIRLDTAK 219
Query: 216 HM 217
H+
Sbjct: 220 HV 221
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 32.7 bits (71), Expect = 0.088
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 41 WKDIADECERFLAPKGFGGVQVSPPSENVIIRLSDGTRPWYERYQVMSYKLITRSGNQDE 100
W+ I D + ++ GF + +SP E + G ++ Y+L GN+++
Sbjct: 64 WQGIVDHLD-YIRDLGFTAISISPVVEQLEGPEYHG-EAYHGHRPKNYYRLNPHFGNEED 121
Query: 101 FLNMTRRCNDVGIRIYADVVINHMTSD 127
++ + G+ + DV INH S+
Sbjct: 122 LKELSDALHGKGMYLMVDVAINHTISE 148
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 30.7 bits (66), Expect = 0.35
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 120 VINHMTSDNRESVGTGGSTANYKEYSYPAVPYTRDHFHHPSCSINNYNDAAQVRACDLVG 179
+++H + N + G GG + KE + PA + HF H + + N A+ G
Sbjct: 72 LVSHPRTKNFDLQGNGGQNSALKEVNTPAY-QSMHHFEHLITPLPSTN-ASHSEVSLSAG 129
Query: 180 LKDLNHNLPYVRDKIVEYLNK 200
+ DLN N + D + + +NK
Sbjct: 130 VNDLNSNSEH--DLLPKSVNK 148
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 50 RFLAPKGFGGVQVSPPSENVIIRLSDGTRP 79
R L G+ G V+PP+ V +DGT P
Sbjct: 357 RILCAVGYSGAAVNPPATTVSFIPADGTEP 386
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 282 FEGKNP-LKWLKSWGENWNLSPSDRVVV 308
FE K P L+ L WG+N L PS+R+++
Sbjct: 530 FESKKPTLEKLLVWGDNHVLMPSNRLLL 557
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 114 RIYADVVINHMTSDNRESVGTGGSTAN-----YKEYSYPAVPYTRDHFHHPSCSINNYND 168
R+ A V T ++ + TGGS+ N + ++ + + T+D H I
Sbjct: 640 RLNAKTVTLEGTVIHKTGLITGGSSNNRSAKHWDDHDFDLLTQTKDRLMHQIGEIEYQKS 699
Query: 169 AAQVRACDLVGLKDLNHNLPYVRDK 193
+ + D V L L + ++DK
Sbjct: 700 SCVITESDTVKLHSLESEISLLKDK 724
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 7.6
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 1/124 (0%)
Query: 104 MTRRCNDVGIRIYADVVINHMTSDNRESVGTGGSTANYKEYSYPAVPYTRDHFHHPSCSI 163
+TR CN +G++I V + + +G N Y + D F
Sbjct: 2 LTRHCNRLGLQIENKFVFRSSSWNCVRRIGKIACNENKYRYEMTSTEEDIDSFFSRVFGE 61
Query: 164 NNYNDAAQVRACDLVGLKDLNHNLPYVRDKIVEYLNKLIALGVAGFRVDAAKHMWPHDLK 223
NY +R +V K H L + V N +I + + +++ K
Sbjct: 62 KNYISDKSLRE-QIVTHKSYKHGLKRYNEPFVSVGNAVIDVCLLNHYLESGNFSTIPSYK 120
Query: 224 EMYN 227
++ N
Sbjct: 121 DLVN 124
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,425
Number of Sequences: 5004
Number of extensions: 85775
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 12
length of query: 379
length of database: 2,362,478
effective HSP length: 74
effective length of query: 305
effective length of database: 1,992,182
effective search space: 607615510
effective search space used: 607615510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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