GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005238-TA|BGIBMGA005238-PA|IPR001810|Cyclin-like F-box
         (556 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 10/44 (22%)

Query: 309 PYWHCVQSQVLVTLSL-------RCKFLQKLDLSWC--GSHRMI 343
           P W    +  LV LSL       RCKFLQ+L  SW    +H+++
Sbjct: 906 PVWQVTLNARLVELSLGSNPWSCRCKFLQELS-SWVSDNAHKVV 948


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)

Query: 431 PGLEHLNVGSC--KMISA 446
           PGLEH N+G    KMI+A
Sbjct: 753 PGLEHANIGPYIQKMIAA 770


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 46  EISVSYTAFNLRGPPSNFPDYGDYPQAFVMRTYGTWWDEAPSAQEDYMPQ 95
           +I  S  +  LR    N   YG   +   ++ Y   WD+   + E Y PQ
Sbjct: 76  KIGESQGSVTLRQEYKNIKLYG-LTKNLEIKNYNIDWDKCILSSESYNPQ 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,645
Number of Sequences: 429
Number of extensions: 7006
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 556
length of database: 140,377
effective HSP length: 61
effective length of query: 495
effective length of database: 114,208
effective search space: 56532960
effective search space used: 56532960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)