GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005237-TA|BGIBMGA005237-PA|IPR003599|Immunoglobulin
subtype, IPR008957|Fibronectin, type III-like fold,
IPR013106|Immunoglobulin V-set
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.64 
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    29   0.84 
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    29   1.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   1.1  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   3.4  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.4  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   4.5  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    26   5.9  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   7.8  

>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 104 YWCEVSLETPIFTAASPPHRLTVVYAQKHPP----IITFGKPDV--VVGGLLRANCTSAP 157
           Y CE+  +TP+F     P ++   Y +   P     +    P V  + GG LR +     
Sbjct: 326 YLCEILHKTPVFVT-DYPQKIKPFYMKSSGPDTVAAVDLLVPQVGELAGGSLRKDHLDEY 384

Query: 158 AAPAPKLTWYID 169
               P+L WY+D
Sbjct: 385 KTYPPELQWYLD 396


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 37  LRCLHQVPPQLLYKVEFLTSEAKLLQYV 64
           ++C+ Q+P +LLYK EF    +KL + +
Sbjct: 626 IKCVEQIPDELLYKREFHKDFSKLYKEI 653


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 154 TSAPAAPAPKLTWYIDNEKVPEDSIKFFSYRVSSSTRTKGGGGYR--HRKHQHRYIAPEF 211
           TS P  P  K+ W I      ED+  ++++R+        G  YR  H+ H HRY AP F
Sbjct: 125 TSVPFPPVTKMIWQITLFFFLEDTWHYWAHRLFHY-----GIFYRFIHKVH-HRYSAP-F 177

Query: 212 NYTAKY 217
             +A+Y
Sbjct: 178 GLSAEY 183


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 111 ETPIFTAASPPHRLTVVYAQKHPPIITFGKP 141
           E P F   S P R+   Y Q HPP   F  P
Sbjct: 111 EDPNFQIHSTPSRMPPHYVQPHPPFSVFPAP 141


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 267 VSIAELRAPAHGRLQLTCTATIPDEVGP 294
           +++  LRA  H RL +T   TI D  GP
Sbjct: 62  INLETLRAKRHKRLNITGKITISDYAGP 89


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 97  EPSASGLYWCEVSLETPIFTAASPPHRLTVVY----AQKHPPIITFGKPDV-VVGGLL 149
           +PS SG Y   +S + P  T+AS P   +       AQKH        P V V+GGL+
Sbjct: 53  DPSYSGFYSTVISTQNPEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLI 110


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 108 VSLETPIFTAASPPHRLTVVYAQKHPPIITFGKPDVVVGGL 148
           + L  P  T    P R T+    + PP++  G P+   G L
Sbjct: 3   LKLALPRSTTPKDPARCTLDIRMESPPLVFLGSPETSSGAL 43


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 86  ATENSITIENLEPSASGLYWCEVSL-ETP 113
           AT N++ +  L+PS S + W +  + ETP
Sbjct: 166 ATRNTLLLSTLKPSTSWVLWLDSDIVETP 194


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 250 KMQEKPRPPPVVPISLWVSIAELRAPAHGRLQLTCTATIPDEVG 293
           K++++  PPP+VP       AE  +    +L L+ T  + +E G
Sbjct: 357 KLEKRMLPPPIVPCITNPEAAENFSVEFTKLPLSTTPILHEEFG 400


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,262
Number of Sequences: 5004
Number of extensions: 62678
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 10
length of query: 309
length of database: 2,362,478
effective HSP length: 73
effective length of query: 236
effective length of database: 1,997,186
effective search space: 471335896
effective search space used: 471335896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)