Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005237-TA|BGIBMGA005237-PA|IPR003599|Immunoglobulin
subtype, IPR008957|Fibronectin, type III-like fold,
IPR013106|Immunoglobulin V-set
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 31 1.6
10_08_0974 + 21969713-21971914 30 2.7
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 30 2.7
07_01_0974 + 8211602-8212051 29 3.6
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595... 29 3.6
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 29 4.7
05_05_0148 - 22729469-22730116,22730215-22730589 29 6.3
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 28 8.3
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936... 28 8.3
04_04_0916 + 29390813-29391893,29402054-29402652 28 8.3
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 28 8.3
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 223 ETTASPPLNLTK-HHKCTLKEAQTEEMAKMQEKPRPPPVVPISLWVSIAELRAPAHGRLQ 281
E +++ L LT+ TLK+A E+M K+Q+ P+P + + L+ + E A LQ
Sbjct: 814 EISSADELTLTELMFSGTLKDATVEQMEKLQDAPKPREELDL-LFFQLQE-TARRVANLQ 871
Query: 282 LTCTATIPDE 291
L C I E
Sbjct: 872 LDCKIQIDVE 881
>10_08_0974 + 21969713-21971914
Length = 733
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 205 RYIAPEFNYTAKYWALISETTASPPLNLTKHHKCTLKEAQTEEMAKMQEKPRPPP 259
R + P YTA +ISE L++T K +K+ + E K +P P P
Sbjct: 463 RVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLEFLKGDREPDPQP 517
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 105 WCEVSLETPIFTAASPPHRLTVVYA 129
WC S P+F PP T++YA
Sbjct: 381 WCATSANNPMFAEVVPPKHRTMIYA 405
>07_01_0974 + 8211602-8212051
Length = 149
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 152 NC--TSAPAAPAPKLTWYIDNEKVPEDS------IKFFSYRVSSSTRTKGGGGYRHRK 201
NC T+APAAP+P + N P + F S S++ GGGG+RH +
Sbjct: 80 NCGTTTAPAAPSPPGVY---NYSAPSGGGGGGGQLAFLSGSARSTSHLPGGGGWRHAR 134
>03_02_0640 -
10058828-10058971,10059066-10059201,10059512-10059590,
10060861-10060927,10061014-10061100,10061474-10061567,
10061663-10061749,10062267-10062328,10062485-10062584,
10062729-10062827,10062969-10063033,10063617-10063694,
10063787-10063873,10064383-10064466,10064860-10064955,
10065045-10065122,10066049-10066139,10066224-10066315,
10066433-10066560,10067421-10067495,10067670-10067850
Length = 669
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 143 VVVGGLLRANCTSAPAAPAPKLTWYIDNEKVPEDSIKFFSYRVSSS 188
++VGG+ T + AA + +L W+ + E +++ + R SSS
Sbjct: 536 IIVGGITATTFTLSQAAGSLRLLWHHKRNQEAERKLRWINLRYSSS 581
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 151 ANCTSAPAAPAPKLTWYIDNEKVPEDSIKFFSYRVSSSTRTKGGGGYRHRKHQHRYIAPE 210
A+ SAPA A +L E P + + + + +GGGG + HQ Y
Sbjct: 16 ASSASAPAPSAARLNAAAP-EFTPRSAAHHHHHHANPRRQHRGGGGGAYHHHQQHYQPHH 74
Query: 211 FNYTAKYW 218
+ ++W
Sbjct: 75 HHQHHQHW 82
>05_05_0148 - 22729469-22730116,22730215-22730589
Length = 340
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 221 ISETTASPPLNLTKHHKCTLKEA-QTEEMAKMQEKPRPPPVVPISLWVSIAELRAP 275
+S +T+S +L + TL+ T ++ M P PPP P S + I E+ P
Sbjct: 96 VSSSTSSSSGDLLEFSSGTLRRVFSTGDLQAMNVPPSPPPPPPFSGDICIQEVGGP 151
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 205 RYIAPEFNYTAKYWALISETTASPPLNLTKHHKCTLKEAQTEEMAKMQEKPRPPPVVPI 263
R I P YTA ++SE L++T + ++ + E+ K P P P P+
Sbjct: 433 RVIYPTLRYTASGGNIVSEKGIGTLLSVTASLQRCIRHFRKLELVKGDRDPEPLPCSPM 491
>06_03_0943 -
26191798-26192244,26192802-26192966,26193515-26193668,
26194153-26194346,26194494-26194695,26194899-26195103,
26195672-26195843
Length = 512
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 67 RVPPFTNYSFPGGRINMSLATENSITIENLEPSASGLYWCEVSLETPIFTAASPPHRLTV 126
+VP ++++ P R L + + PS + + S ETP + +++ H L+
Sbjct: 243 KVPCWSHFLKPEERCRSPLPPSVDVPYVDGYPSLANPKMLDFSFETPGYKSSTKEHHLS- 301
Query: 127 VYAQKHPPIITFGK 140
Y PP ++F K
Sbjct: 302 -YLSYAPPELSFDK 314
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 198 RHRKHQHRYIAPEFNYTAKYWALISETTASPPLNLTKHHKCTLKEAQTEEMAKMQEKPR 256
RH + ++ E YT K W +S+ T LN + E A ++E P+
Sbjct: 441 RHTQETALHLLAECRYTRKIWTALSDWTGCGQLNPGQWQPAQSVSEWWEATANLKEVPK 499
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 198 RHRKHQHRYIAPEFNYTAKYWALISETTASPPLNLTKHHKCTLKEAQTEEMAKMQEKPR 256
RH + ++ E YT K WA +S+ T LN + E A ++E P+
Sbjct: 753 RHTQETALHLLAECRYTRKIWAALSDWTRCGQLNPGQWQPAQSVLEWWEATANLKEVPK 811
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,501
Number of Sequences: 37544
Number of extensions: 497113
Number of successful extensions: 1324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 11
length of query: 309
length of database: 14,793,348
effective HSP length: 82
effective length of query: 227
effective length of database: 11,714,740
effective search space: 2659245980
effective search space used: 2659245980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -