GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005237-TA|BGIBMGA005237-PA|IPR003599|Immunoglobulin
subtype, IPR008957|Fibronectin, type III-like fold,
IPR013106|Immunoglobulin V-set
         (309 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 88  ENSITIENLEPSASGLYWCEVSLETPIFTAASPPHRLTVVYAQKHPPII--TFGKPDVVV 145
           E  + IE+++    G+Y C V  +     A +       +  +  PP I   F +  +  
Sbjct: 352 EAVLRIESVKKEDKGMYQCFVRNDQESAQATAE----LKLGGRFEPPQIRQAFAEETLQP 407

Query: 146 GGLLRANCTSAPAAPAPKLTWYIDNEKV 173
           G  +   C  A   P P++TW +D +++
Sbjct: 408 GPSMFLKCV-ASGNPTPEITWELDGKRL 434



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 88  ENSITIENLEPSASGLYWCE------VSLETPIF-TAASPPH 122
           + +++I N++ +  G Y CE        L   IF +  +PPH
Sbjct: 737 DGTLSINNIQKTNEGYYLCEAVNGIGAGLSAVIFISVQAPPH 778


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 153 CTSAPAAPAPKLTWY--IDNEKVPEDSIKF---FSYRVSSST 189
           C+SA + PA  + W+  +  E+VPED   F     Y + SST
Sbjct: 173 CSSAISFPA--IVWWRAVRTEEVPEDKCPFTEHLGYLIFSST 212


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 133 PPII--TFGKPDVVVGGLLRANCTSAPAAPAPKLTWYIDNEKVP 174
           PP++  +F +  +  G  +   C SA   P P++TW +D   +P
Sbjct: 421 PPMLLYSFIEQTLQPGPAVSLKC-SAAGNPTPQVTWALDGFALP 463



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 70  PFTNYSFPGGRINMSLATENSITIENLEPSASGLYWCEVS 109
           P TNY     R          + I + E S SG Y+C+ S
Sbjct: 851 PSTNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQAS 890


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 133 PPII--TFGKPDVVVGGLLRANCTSAPAAPAPKLTWYIDNEKVP 174
           PP++  +F +  +  G  +   C SA   P P++TW +D   +P
Sbjct: 421 PPMLLYSFIEQTLQPGPAVSLKC-SAAGNPTPQVTWALDGFALP 463



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 70  PFTNYSFPGGRINMSLATENSITIENLEPSASGLYWCEVS 109
           P TNY     R          + I + E S SG Y+C+ S
Sbjct: 847 PSTNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQAS 886


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 162 PKLTWYIDNEKVPEDSIKFFSYRVSSSTRTKGGGGYRHRKHQHRYIAPEFNYTAKYWALI 221
           PKL  +   +    + I F  Y   SS  ++     R    ++  + PEF    +  + I
Sbjct: 601 PKLALFATKDIKQNEEITF-DYMCQSSKNSENSIMQRASMKENLNVYPEFQENVQLCSEI 659

Query: 222 SETTASPPLNLTK 234
           SE+ +S    L K
Sbjct: 660 SESYSSNNKTLCK 672


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 166 WYIDNEKVPEDSIKFFS 182
           WY+    VPE  + +F+
Sbjct: 207 WYLTKHNVPEQRLNYFT 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 226 ASPPLNLTKHHKCTLKEAQTEEMAKMQEK 254
           + PP     HH+ T  +AQ +   + Q++
Sbjct: 807 SQPPHQQLHHHQSTHPQAQAQAQPQQQQQ 835


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,025
Number of Sequences: 429
Number of extensions: 4320
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 12
length of query: 309
length of database: 140,377
effective HSP length: 58
effective length of query: 251
effective length of database: 115,495
effective search space: 28989245
effective search space used: 28989245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)