GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005235-TA|BGIBMGA005235-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   2.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   8.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 86  LRAMTVDATLPLTFISLCTTYIIVVIQFSH 115
           +R M   A      +S+ +TY++ V  + H
Sbjct: 1   MRCMLEIAARSFLLLSIASTYVVSVAGYKH 30


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 28  RERVERKYTYQRRILLHKNLDLFVSSFNNTVEFVDDEY 65
           R+R ER+ + + +I+   + +   S++NN   + ++ Y
Sbjct: 301 RDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNY 338


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,351
Number of Sequences: 429
Number of extensions: 1156
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)