GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005233-TA|BGIBMGA005233-PA|IPR004133|DAN,
IPR006207|Cystine knot, C-terminal
         (232 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    44   1e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.79 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.79 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 126 TKKEYLKEDWCKTEPLVQKIREPGCIPTTVINKFCYGQCNSFYIPKGPRRRDNSDRPQPA 185
           T K  +  D C+  P++  ++ PGC+P  + +  C G+C+S+    G +           
Sbjct: 19  TAKAIIGVDECQATPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGSKIWQME------ 72

Query: 186 FKSCSFCRPKNFTWITVTLRCPGQNP---PFRRKRLQKIKQCKC 226
            +SC  C+       +V+L CP   P    FR+   +   +C C
Sbjct: 73  -RSCMCCQESGEREASVSLFCPRAKPGEKKFRKVITKAPLECMC 115


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 87   GSSESGSIVSVPDQEDATEIPPGIEF 112
            GSS S  ++SV  Q  A  IPP   F
Sbjct: 1482 GSSPSSPVLSVRTQGQAPGIPPAATF 1507


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 87   GSSESGSIVSVPDQEDATEIPPGIEF 112
            GSS S  ++SV  Q  A  IPP   F
Sbjct: 1478 GSSPSSPVLSVRTQGQAPGIPPAATF 1503


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 5   VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 43


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 73  VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 111


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 97  VPDQEDATEIPPGIEFRKILKSSKNALIVTKKEYLKEDW 135
           V ++ +  E+  GI  ++I+   +   I+T   +LK +W
Sbjct: 73  VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEW 111


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 177 DNSDRPQPAFKSCSFCRPKNF 197
           DN +R Q A +S  + R KN+
Sbjct: 50  DNDERRQAAIQSGEYDRTKNY 70


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 145 IREPGCIPTTVINKFCYGQC 164
           I + GC  T VI + C G C
Sbjct: 227 IVQTGCTITRVIPQVCSGNC 246


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 145 IREPGCIPTTVINKFCYGQC 164
           I + GC  T VI + C G C
Sbjct: 227 IVQTGCTITRVIPQVCSGNC 246


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,963
Number of Sequences: 429
Number of extensions: 3345
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 14
length of query: 232
length of database: 140,377
effective HSP length: 56
effective length of query: 176
effective length of database: 116,353
effective search space: 20478128
effective search space used: 20478128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)