GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005232-TA|BGIBMGA005232-PA|undefined
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   4.7  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 191 QSNVLDMVDALCSNPCSLDTNIQQQGILYDYLSQGTRDRLTAPMIKCVTALGRTALAQCL 250
           QS +L+ +D      C +D  +   G +Y  L +   +R T       T +      QCL
Sbjct: 156 QSCLLERLDDEAHQYCYVDNELDS-GCVYVSLLENP-ERFTGYSGPHSTRIWEMIYNQCL 213

Query: 251 EDY----LDYLDECMQGPRPPPHHGMYMLREAILDAST 284
            D     +D+    MQGP  PP      L +  +DA T
Sbjct: 214 PDSSAPTIDFPALFMQGPLAPPPKPQEQLLKERMDAWT 251


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,570
Number of Sequences: 5004
Number of extensions: 60550
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 1
length of query: 399
length of database: 2,362,478
effective HSP length: 74
effective length of query: 325
effective length of database: 1,992,182
effective search space: 647459150
effective search space used: 647459150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)