GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005232-TA|BGIBMGA005232-PA|undefined
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    33   0.30 
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026...    31   2.1  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    29   4.9  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    29   8.6  
05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727           29   8.6  

>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 33.5 bits (73), Expect = 0.30
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 286 LLRSEPTTYLEDYVTTDYTMYEMLGESILPRRLVFPVSAAVKNDNSPAEKTEEDSV 341
           +L S   T+ E+     YT      E+++PR    P+     ND +P E  EED++
Sbjct: 607 ILESRDATFFENEFPMKYTPSTSSKETVMPREHFAPIE---HNDQTPEENPEEDNI 659


>07_03_0814 +
           21700274-21701923,21702282-21702434,21702563-21702634,
           21702923-21703033
          Length = 661

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 227 RDRLTAPMIKCVTALGRTALAQCLEDYLDYLDECMQGPRPPPHHGMYMLREAILDASTCL 286
           R RL  P   C T+   +A     +  L YL      P PPP   + +    +  +   +
Sbjct: 15  RHRLRLPPAGCSTSSSPSATRYDFDPLLSYLSTTSSSPSPPPTSVLPVTESRLAASYAAV 74

Query: 287 LRSEPTTYLEDYVTTDYTMYEMLGESILP----RRLVFPV 322
              E    L +   TD ++   L  ++LP     RL FP+
Sbjct: 75  PAREWHALLRELAATDASL--PLAFALLPFLHRHRLCFPL 112


>01_05_0080 -
          17957276-17957676,17957810-17957921,17958001-17958126,
          17958199-17958331,17960069-17960193,17960314-17960409,
          17960430-17960621,17960694-17960800,17961318-17961426,
          17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 9  LNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTSPVAG 63
          L  + +  LA DV Y+LR+ +          K++ + A DV++   L +  PV G
Sbjct: 21 LPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEPVYG 75


>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
            295071-295646,295828-296260,296470-297338,297433-298227,
            298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7    CELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFML 55
            C   + A   L  D+  K R+ + T+  +S+  +KS ++AW +  V+ +
Sbjct: 1189 CSSIITALLLLTLDILLK-REEVPTLPKNSDWDRKSEMEAWTIRVVYFI 1236


>05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727
          Length = 489

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 220 DYLSQGTRDRLTAPMIKCVTALGRTALAQCLEDYLDYLDECMQGP 264
           +Y S+G+R  +  P     TA GR+   +  +D LD  D+ + GP
Sbjct: 394 NYTSRGSRSSIEKPR-NSATASGRSVFRESEDDELDTEDDELWGP 437


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,502
Number of Sequences: 37544
Number of extensions: 376501
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,793,348
effective HSP length: 84
effective length of query: 315
effective length of database: 11,639,652
effective search space: 3666490380
effective search space used: 3666490380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)