GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005232-TA|BGIBMGA005232-PA|undefined
         (399 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069735-1|AAC39905.1|  622|Homo sapiens PCAF associated factor ...    54   1e-06

>AF069735-1|AAC39905.1|  622|Homo sapiens PCAF associated factor 65
           alpha protein.
          Length = 622

 Score = 53.6 bits (123), Expect = 1e-06
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 13/174 (7%)

Query: 1   MAEQVACELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTSP 60
           MAE    EL+ E A  LAEDV Y+LR+     +   +  K+ ++   D N     +    
Sbjct: 20  MAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEA 79

Query: 61  VAGACGSQYA---SFGDDNKYCCQIEHLLNVTEFALSTQTYVYCSPPTISVE-WIMDDKX 116
           V G  GSQ A       + +     +  +N+ E AL+T     C+   + V    +D K 
Sbjct: 80  VCG-YGSQEALPMRPAREGELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKG 138

Query: 117 X--------XXXXXXXVQLHNYYTKVARAILNLRKKPKEVAVEDLLTNTRIGPI 162
                             L  YY +V RA+L    +  +VA++DL TN++IG +
Sbjct: 139 NLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKIGAL 192


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,592,715
Number of Sequences: 224733
Number of extensions: 2028613
Number of successful extensions: 3107
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3105
Number of HSP's gapped (non-prelim): 1
length of query: 399
length of database: 73,234,838
effective HSP length: 92
effective length of query: 307
effective length of database: 52,559,402
effective search space: 16135736414
effective search space used: 16135736414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)