GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005232-TA|BGIBMGA005232-PA|undefined
         (399 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069583-1|AAL39728.1|  717|Drosophila melanogaster LD32410p pro...    37   0.056
AE014134-153|AAF51457.2|  717|Drosophila melanogaster CG3883-PA ...    37   0.056
U06459-1|AAC46480.1|  592|Drosophila melanogaster transcription ...    34   0.40 
AY051702-1|AAK93126.1|  606|Drosophila melanogaster LD24529p pro...    34   0.40 
AE014296-3177|AAF49139.2|  606|Drosophila melanogaster CG32211-P...    34   0.40 
L25443-1|AAA16536.1|  592|Drosophila melanogaster TAFII60 protein.     32   1.2  

>AY069583-1|AAL39728.1|  717|Drosophila melanogaster LD32410p
           protein.
          Length = 717

 Score = 36.7 bits (81), Expect = 0.056
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 3   EQVACELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWD-VNTVFMLTDTSPV 61
           +Q   EL+ +    LAED SYK+ + I+ + ++S       V  +D VN V    D  P+
Sbjct: 141 DQTDVELSQDVCARLAEDASYKVWELINNVKIYSR--HSGGVVTYDLVNEVLKDADVPPM 198

Query: 62  AGACGSQYASFGDDNKY 78
            GA  S +     D  +
Sbjct: 199 LGAMDSDWDRIDYDGSF 215


>AE014134-153|AAF51457.2|  717|Drosophila melanogaster CG3883-PA
           protein.
          Length = 717

 Score = 36.7 bits (81), Expect = 0.056
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 3   EQVACELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWD-VNTVFMLTDTSPV 61
           +Q   EL+ +    LAED SYK+ + I+ + ++S       V  +D VN V    D  P+
Sbjct: 141 DQTDVELSQDVCARLAEDASYKVWELINNVKIYSR--HSGGVVTYDLVNEVLKDADVPPM 198

Query: 62  AGACGSQYASFGDDNKY 78
            GA  S +     D  +
Sbjct: 199 LGAMDSDWDRIDYDGSF 215


>U06459-1|AAC46480.1|  592|Drosophila melanogaster transcription
          initiation factorTFIID 62 kDa subunit protein.
          Length = 592

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 1  MAEQVAC-ELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTS 59
          +AE +    L+ +AA  LAEDVS KL++ +   A      K+ ++   D++    + +  
Sbjct: 15 IAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVE 74

Query: 60 PVAGACGSQYASF 72
          P  G     +  F
Sbjct: 75 PQYGFVAKDFIPF 87


>AY051702-1|AAK93126.1|  606|Drosophila melanogaster LD24529p
           protein.
          Length = 606

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 1   MAEQVAC-ELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTS 59
           +AE +    L+ +AA  LAEDVS KL++ +   A      K+ ++   D++    + +  
Sbjct: 29  IAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVE 88

Query: 60  PVAGACGSQYASF 72
           P  G     +  F
Sbjct: 89  PQYGFVAKDFIPF 101


>AE014296-3177|AAF49139.2|  606|Drosophila melanogaster CG32211-PA
           protein.
          Length = 606

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 1   MAEQVAC-ELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTS 59
           +AE +    L+ +AA  LAEDVS KL++ +   A      K+ ++   D++    + +  
Sbjct: 29  IAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVE 88

Query: 60  PVAGACGSQYASF 72
           P  G     +  F
Sbjct: 89  PQYGFVAKDFIPF 101


>L25443-1|AAA16536.1|  592|Drosophila melanogaster TAFII60
          protein.
          Length = 592

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 1  MAEQVAC-ELNVEAATNLAEDVSYKLRQTISTIALHSEMMKKSRVDAWDVNTVFMLTDTS 59
          +AE +    L+ +AA  LAEDVS KL++ +   A      K+ ++   D++    + +  
Sbjct: 15 IAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVE 74

Query: 60 PVAG 63
          P  G
Sbjct: 75 PQYG 78


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,788,328
Number of Sequences: 52641
Number of extensions: 675636
Number of successful extensions: 1388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 6
length of query: 399
length of database: 24,830,863
effective HSP length: 87
effective length of query: 312
effective length of database: 20,251,096
effective search space: 6318341952
effective search space used: 6318341952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)