GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005232-TA|BGIBMGA005232-PA|undefined
         (399 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-1|CAA92294.2|  489|Caenorhabditis elegans Hypothetical pr...    29   7.7  

>Z68160-1|CAA92294.2|  489|Caenorhabditis elegans Hypothetical
          protein D1046.1 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 56 TDTSPVAGACGSQYASFGDDNKYCCQIEHLL 86
          T T+P AG  G++ A+  +  KYCC + +LL
Sbjct: 63 TVTAPTAGI-GAKPATSSEGRKYCCYVGNLL 92


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,484
Number of Sequences: 27539
Number of extensions: 341235
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 1
length of query: 399
length of database: 12,573,161
effective HSP length: 83
effective length of query: 316
effective length of database: 10,287,424
effective search space: 3250825984
effective search space used: 3250825984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)