GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005231-TA|BGIBMGA005231-PA|undefined
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    40   4e-04
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   1.2  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   3.8  

>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 17  GTSFTNNKASQYHTIKYDFKPASVDVNKMATVTVGTKNEVTVTVPHLMGAGVPQTVFKGN 76
           G+SF+ N ++   +IKY+F P SVD ++   V    +    + +P       P  +F+G+
Sbjct: 14  GSSFSKN-SNGLLSIKYNFIPESVDPSRRG-VLEKAQEAYRLRLPSTFDDDRPH-IFEGS 70

Query: 77  -QKPYTKECVLIIDKVTGEITLEKLSNNIQVKKTRQENTQKPRPLTPVT 124
            Q+    +CVLI +  T   TLE +    ++   R     K  P   +T
Sbjct: 71  CQRARNVDCVLIFNAKTKTFTLEHIDEIARLNALRNPKVSKTVPSNAIT 119


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 23  NKASQYHTIKYDFKPASVDVNKMATVTVGTKNEVTVTVPHLMGAGVPQTVFKGNQKPYTK 82
           N +  YHT+K+D K   +DV+ + +V +    +        + +G+ + +FK N+  Y K
Sbjct: 97  NNSHIYHTVKHDTKRRGIDVSGV-SVNLSQMMKAKDDSVKSLTSGI-EYLFKKNKVEYAK 154

Query: 83  ECVLIIDKVT 92
                ID  T
Sbjct: 155 GTGSFIDPQT 164


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 42  VNKMATVTVGTKNEVTVTVPHLMGAGVPQTVFKGNQKPYTKECVLIIDKVTGEITLEKLS 101
           V K A +   T+   T+ +P L+G   P+ +  G+     K+  LIIDK+  E      +
Sbjct: 117 VGKSAVIKTSTRQ--TIFLP-LIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKA 173

Query: 102 NNIQVKKTRQ 111
             +  K T +
Sbjct: 174 MEVDEKPTER 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,346
Number of Sequences: 5004
Number of extensions: 51968
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 2,362,478
effective HSP length: 73
effective length of query: 262
effective length of database: 1,997,186
effective search space: 523262732
effective search space used: 523262732
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)