Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005231-TA|BGIBMGA005231-PA|undefined
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080... 48 1e-05
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 31 1.3
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 31 1.7
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 30 3.0
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 4.0
01_06_1219 - 35490475-35491635 29 5.3
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 29 7.0
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 29 7.0
02_01_0302 - 2021221-2023305 28 9.2
>01_05_0057 +
17705023-17705143,17706186-17706538,17708002-17708044,
17708698-17709140
Length = 319
Score = 48.0 bits (109), Expect = 1e-05
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 13 ELKLGTSFTN-NKASQYHTIKYDFKPASVDVNKMATVTVGTKNEVTVTVPHLMGAGVPQT 71
EL+LG+S + + +++ T++Y+FKPAS+D + ++ N VTV H G P+
Sbjct: 20 ELRLGSSCRDPSPTAKFCTLRYEFKPASIDKTQAGSLQKTKDNRVTVEF-HNNQPGKPKV 78
Query: 72 VFKGNQKPY-TKECVLIIDKVTGEITLEKLSNNIQ 105
F+G+Q+ Y + VL D T LE+L ++
Sbjct: 79 TFEGSQEEYKDNDGVLFFDGET--FRLERLHRAVK 111
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 245 PDRPLPVERPPNNTHPPPQQMQVEQXXXXXXXXXXXXXXXXXXXXXEDNTAASHNQPINH 304
P+ P P ++ PPP V D+++A+ P+ H
Sbjct: 53 PESHFPSRPRPQSSPPPPGPAMVGADAESSAVVDAGEGHGDLAL---DSSSAASTDPLLH 109
Query: 305 AVPNGNVSNPSFPSDVLNDDLCLSESGSD 333
P+ + S PS P+ + + D + E G D
Sbjct: 110 PPPSPS-STPSSPTAIADHDAFIEEDGED 137
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 64 MGAGVPQTVFKGNQKPYTKECV-LIIDKVTGEITLEKLSNNIQVKKTRQENTQ 115
+ G + +++ +++ Y + V L+ DK GE+ LEKL + K+++ ENTQ
Sbjct: 540 INTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKL-KILTSKESKTENTQ 591
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 144 KRVTPHAGPGVPANNQARFNGAGTQKPPVNMVRSPQRIKSSPPQAPWSGGGNSTLASLPM 203
+ V G G+ + A+ G G + PP +SP P +AP L+SL
Sbjct: 35 RSVAAQLGDGLSRSASAQRRGGGGRAPPRAAGKSPAPPPPPPRRAPAGSSSLPDLSSLYS 94
Query: 204 IGL 206
+GL
Sbjct: 95 VGL 97
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.5 bits (63), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 240 NGYSRPDRPLPVERPPNNTHPPPQQ 264
N + P++P P+++ P + PPPQ+
Sbjct: 61 NAHDAPEKPPPLQKAPKVSPPPPQK 85
>01_06_1219 - 35490475-35491635
Length = 386
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 150 AGPGVPANNQARFNGAGTQKPPVNMVRSPQRIKSSPPQAPWSGGGNSTLAS 200
+ PGVP + A + A PP P R K P + W G GNST AS
Sbjct: 66 SSPGVPKRSSACMHMAQEIMPPPKP--PPGRWKQCPG-SNWCGYGNSTAAS 113
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 244 RPDRPLPVERPPNNTHPPP 262
+P PLP +RPP + PPP
Sbjct: 174 KPPPPLPSQRPPPSRSPPP 192
>03_05_0440 + 24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 291 EDNTAASHNQPINHAV-----PNGNVSNPSFPSDVLN 322
+DNT + H P + + PNG S P FPS++++
Sbjct: 1169 QDNTTSGHFDPATNNISSPRLPNGCDSEPQFPSELIS 1205
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 248 PLPVERPPNNTHPPPQQMQVEQXXXXXXXXXXXXXXXXXXXXXEDNTAASHNQPINHAVP 307
P PV PP P PQ + +S P +H+ P
Sbjct: 401 PAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPP 460
Query: 308 NGNVS-NPSFPS 318
G+ S PS+PS
Sbjct: 461 GGSSSTTPSYPS 472
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.129 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,553,408
Number of Sequences: 37544
Number of extensions: 364838
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 14,793,348
effective HSP length: 82
effective length of query: 253
effective length of database: 11,714,740
effective search space: 2963829220
effective search space used: 2963829220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 60 (28.3 bits)
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