GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005231-TA|BGIBMGA005231-PA|undefined
         (335 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 73  FKGNQKPYTKECVLIIDKVTGEITLEKLSNNIQV 106
           F G   PYT    ++I  V G I +  +  NI V
Sbjct: 29  FPGKNSPYTVTQAILIALVLGSIIVGTVIGNILV 62


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 317 PSDVLNDDLCLSESGSDS 334
           PSDVL + L +SE GS++
Sbjct: 571 PSDVLYNRLVVSEDGSET 588


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 291 EDNTAASHNQPINH 304
           EDN  ASHN  +N+
Sbjct: 394 EDNALASHNNLLNN 407


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,561
Number of Sequences: 429
Number of extensions: 3599
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 140,377
effective HSP length: 58
effective length of query: 277
effective length of database: 115,495
effective search space: 31992115
effective search space used: 31992115
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 44 (21.8 bits)