Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005229-TA|BGIBMGA005229-PA|IPR012336|Thioredoxin-like
fold
(238 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 32 0.085
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 29 0.60
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 29 0.60
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 29 0.79
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.4
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.2
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 26 5.6
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 25 7.4
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 7.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 7.4
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 25 7.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.4
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 9.7
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.085
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 100 WVLYFSTKGSDR----LVLHQMRMSFPNLNFGEIDCDVWAELCSSLHVEAAPAWAVLKRG 155
W + F+ D+ ++ +++ M FP++ ++ CD+ E C+ + P VLK G
Sbjct: 46 WFVEFTESKYDKEEFSVIWNEVSMEFPDIRRAKVFCDLDLEFCAQQEIYDHPKVVVLKNG 105
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 124 LNFGEIDCDVWAELCSSLHVEAAPAWAVLK 153
L +++CD E+C+ H++ P + V +
Sbjct: 230 LKMAQVNCDEEKEMCNHFHIKKFPTFRVFQ 259
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 29.1 bits (62), Expect = 0.60
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 54 FIKD-IESTNEEDVLKDIVAALPKIELIDPEKLKNIR 89
F KD + T E ++L+DI+ ++PK+ ++D + ++R
Sbjct: 343 FPKDGLIGTTEIEILRDILPSIPKVSVMDDTLIDSVR 379
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 103 YFSTKGSDRLVLHQMRMSFPNLNF-GEIDCDVW-AELCSSLHVEAAPAWAVLKRGGAYQR 160
YF KG+++++L Q ++S + E +W A + SS H + + + K G Y +
Sbjct: 192 YFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLK 251
Query: 161 AYAPAD 166
+ AD
Sbjct: 252 HNSVAD 257
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.79
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 28 AIVEDESLRDKLSESDYTTIVFKYKGFIKDIESTNEEDVLKDIVAALPKIELIDPEKLKN 87
+I++DE L L + + T + GF+ +ES ++E V K+ +E +D K KN
Sbjct: 245 SIIDDEMLEIPLGKHNNTNLPALTAGFLDPVES-DDEFVEKE-------LEEVDIPKRKN 296
Query: 88 IRNKLRRGEQTPWVLYFSTKGSDRLV 113
R +R Q W + KG++ L+
Sbjct: 297 RRG--QRARQAIWEKKYG-KGANHLI 319
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 50 KYKGFIKDIESTNEEDVLKDIVA 72
+Y+G+ KD+E NEED L D +A
Sbjct: 319 QYRGYNKDLEE-NEEDDLGDFIA 340
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 123 NLNFGEIDCDVWAELCSSLHVEAAPAWAVLKRG 155
N +FGE+DC EL S ++ A P + + G
Sbjct: 79 NFHFGEVDCS--KELSSCANIRAVPTLYLYQNG 109
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 45 TTIVFKYKGFIKDIESTNEE-DVLKDIVAALPKIELIDPEKLKNIRNKLRRGEQTP 99
TT FK + F++ ++ + ++ LPK D KLK+ + KL GEQ P
Sbjct: 394 TTRGFKEQDFVRVVDYIDRALTFAANLQKELPK----DANKLKDFKAKLGEGEQYP 445
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 26 AIAIVEDESLRDKLSESD--YTTIVFKYKGFIKDIESTNE 63
A A+ E E+LR KL D Y T+ KY K +E +
Sbjct: 148 AKAVEELETLRTKLETRDKEYETLAEKYAAVTKTVEKKKD 187
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 52 KGFIKDIESTNE-EDVLKDIVAALPKIELIDPEKLKNIRN 90
K + D+ TN EDVL DI + KI + EK N+R+
Sbjct: 254 KDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRD 293
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 79 LIDPEKLKNIRNKLRRGEQTPWVLYFSTKGSDRLVLHQMRMSFPNLNFGEIDCDVWAELC 138
L DP K + N +G +T W + F K ++ L +++R + EID V +
Sbjct: 62 LSDPSKKEIYDNFGEQGLKTDWNVGFPGKSAEEL-KNKIREQIQERDIHEIDSLVQSRSE 120
Query: 139 SSLHVEAAPAWA 150
+++ V P +A
Sbjct: 121 TTIVVNMTPLFA 132
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 128 EIDCDVWAELCSSLHVEAAPAWAVLKRG 155
E+DC +LCS + P V K G
Sbjct: 77 EVDCTEEGDLCSEYSIRGYPTLNVFKNG 104
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 24 LVAIAIVEDESLRDKLSESDYTTIVFKYKGFIKDIESTNEEDVLKDIVAALPKIELIDP 82
L+ I ++ S+ K+ S ++ V K K KD++ + + ++ IEL DP
Sbjct: 1513 LLEKCICQENSMISKVGLSCFSQFVLKNKNQFKDVDWDEIINSINQLLQMTLPIELRDP 1571
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 24 LVAIAIVEDE-SLRDKLSESDYTTIVFKYKGFIKDIESTNEEDVLKDIVAALPKIELIDP 82
++ + +ED S + +Y + GF K + + ++L ++AL I+++ P
Sbjct: 112 VIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCISALRAIDVLKP 171
Query: 83 EKLKNIRNK 91
K+++NK
Sbjct: 172 --TKSLQNK 178
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,622
Number of Sequences: 5004
Number of extensions: 41413
Number of successful extensions: 94
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 14
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -