GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005229-TA|BGIBMGA005229-PA|IPR012336|Thioredoxin-like
fold
         (238 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 33  ESLRDKLSESDYTTIVFKYKGFIKDIESTNEEDVLKDIVAA 73
           E  RD++ E+ +T  V   +G    +   N  DVL +I+ A
Sbjct: 311 ERWRDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEA 351


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 123 NLNFGEIDCDVW 134
           N +FG I CD+W
Sbjct: 106 NWSFGTIMCDLW 117


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 75  PKIELIDPEKLKNIRNKLRRGEQT 98
           PKI +I  +  KNIR K+  G+++
Sbjct: 758 PKIYIILFQPDKNIRRKVTMGDKS 781


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 75  PKIELIDPEKLKNIRNKLRRGEQT 98
           PKI +I  +  KNIR K+  G+++
Sbjct: 848 PKIYIILFQPDKNIRRKVTMGDKS 871


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,165
Number of Sequences: 429
Number of extensions: 2477
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)