GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005228-TA|BGIBMGA005228-PA|IPR009057|Homeodomain-like
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   7.2  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   7.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.5  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 113 RVGRSTVGGIVKEVCKEIWNTLQPEYMP 140
           R+GR  +G ++ E+ K   N ++  ++P
Sbjct: 374 RLGRKEIGSVIDELKKNTDNIIRKSFLP 401


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 128 KEIWNTLQPEYMPSPTEETWIQSEKGCRETWNF 160
           K ++ T  P  + S T   W+Q   GC  T  F
Sbjct: 85  KSLFYTYAPAVVDSETFIVWLQGGPGCAGTLGF 117


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 90  ERLVICLRYLATGDSHQTIAFSFRVGRSTVGGIVKEVCKEIWNTL 134
           +R  + +++ A+ D H T   SF      V  ++ E+C++ +N++
Sbjct: 693 DRKALKIQFSAS-DKHSTDFSSFNQSELLVANVLHEICEKRFNSV 736


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,098
Number of Sequences: 5004
Number of extensions: 38732
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 3
length of query: 192
length of database: 2,362,478
effective HSP length: 69
effective length of query: 123
effective length of database: 2,017,202
effective search space: 248115846
effective search space used: 248115846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)