GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005228-TA|BGIBMGA005228-PA|IPR009057|Homeodomain-like
         (192 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05062-1|AAA35726.1|  480|Homo sapiens protein ( Human cartilage...    39   0.013
X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific proteo...    38   0.017
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila...    38   0.017
BC036925-1|AAH36925.1|  349|Homo sapiens chromosome 11 open read...    32   1.1  
AK057237-1|BAB71391.1|  349|Homo sapiens protein ( Homo sapiens ...    32   1.1  

>J05062-1|AAA35726.1|  480|Homo sapiens protein ( Human
           cartilage-specific proteoglycan core protein (CSPCP)
           mRNA, 3' end. ).
          Length = 480

 Score = 38.7 bits (86), Expect = 0.013
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 122 IVKEVCKEIWNTLQPE-YMPSPTEETWIQSEKGCRE 156
           I +EVC+E WN  Q   Y   P  ETW+ +E+ CRE
Sbjct: 265 IDQEVCEEGWNKYQGHCYRHFPDRETWVDAERRCRE 300


>X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific
           proteoglycan (600 AA) protein.
          Length = 600

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 124 KEVCKEIWNTLQPE-YMPSPTEETWIQSEKGCRE 156
           +EVC+E WN  Q   Y   P  ETW+ +E+ CRE
Sbjct: 387 QEVCEEGWNKYQGHCYRHFPDRETWVDAERRCRE 420


>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
            proteoglycan core protein protein.
          Length = 2316

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 124  KEVCKEIWNTLQPE-YMPSPTEETWIQSEKGCRE 156
            +EVC+E WN  Q   Y   P  ETW+ +E+ CRE
Sbjct: 2164 QEVCEEGWNKYQGHCYRHFPDRETWVDAERRCRE 2197


>BC036925-1|AAH36925.1|  349|Homo sapiens chromosome 11 open reading
           frame 77 protein.
          Length = 349

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 67  LHDLLIPNISKCTTSWRTPISTRERLVICLRYLATGDSHQTIAFSFRVGRSTVGGIVKEV 126
           L +LL  N+S+ T   R  IS   +++  L +  +G     +  +  + ++++   V  V
Sbjct: 49  LVELLGANLSRPTQRSRA-ISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANV 107

Query: 127 CKEIWNTLQPEYMPSPTEETWIQSEKG-CRETWNFPNYVSSIDGKHVAIKCPKNSGLEY 184
            + +      +++  P +E  IQ+ K         P  +  +D  HVAIK P    L Y
Sbjct: 108 TEALVERAS-QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSY 165


>AK057237-1|BAB71391.1|  349|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32675 fis, clone TESTI1000163. ).
          Length = 349

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 67  LHDLLIPNISKCTTSWRTPISTRERLVICLRYLATGDSHQTIAFSFRVGRSTVGGIVKEV 126
           L +LL  N+S+ T   R  IS   +++  L +  +G     +  +  + ++++   V  V
Sbjct: 49  LVELLGANLSRPTQRSRA-ISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANV 107

Query: 127 CKEIWNTLQPEYMPSPTEETWIQSEKG-CRETWNFPNYVSSIDGKHVAIKCPKNSGLEY 184
            + +      +++  P +E  IQ+ K         P  +  +D  HVAIK P    L Y
Sbjct: 108 TEALVERAS-QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSY 165


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,739,425
Number of Sequences: 224733
Number of extensions: 1215015
Number of successful extensions: 2613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2610
Number of HSP's gapped (non-prelim): 5
length of query: 192
length of database: 73,234,838
effective HSP length: 86
effective length of query: 106
effective length of database: 53,907,800
effective search space: 5714226800
effective search space used: 5714226800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)