GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005226-TA|BGIBMGA005226-PA|IPR003593|AAA ATPase,
IPR003439|ABC transporter related, IPR013525|ABC-2 type transporter
         (531 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.89 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   3.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.89
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 237 PLSVLKEQDPSTGNEETPRSNQRKVLIKRGFLKAKRD 273
           P +V KEQ P++  E TP+  ++     +  + ++++
Sbjct: 774 PANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKE 810


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 108 EPTTGLDSSSCSQVVKLCRDLAQ 130
           E TT LDS   +++V  C+D+ +
Sbjct: 86  ERTTKLDSEQVNRLVNNCKDITE 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,119
Number of Sequences: 429
Number of extensions: 6164
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 531
length of database: 140,377
effective HSP length: 61
effective length of query: 470
effective length of database: 114,208
effective search space: 53677760
effective search space used: 53677760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)