GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005225-TA|BGIBMGA005225-PA|undefined
         (76 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   0.98 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   5.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   6.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 0.98
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 32  LTTQGFSKMPTRDPVDIQFTNIT 54
           ++  G SK P + PVD+    +T
Sbjct: 167 MSVVGLSKAPAQIPVDVLVLTVT 189


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 9   VEDSVSYRPENASVSIGANP 28
           V +SVSY   + +VS+ + P
Sbjct: 391 VNESVSYERGSMTVSVTSKP 410


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.4 bits (38), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 35  QGFSKMPTRDPVDIQFTNIT 54
           Q  S   TR+PVD Q + I+
Sbjct: 503 QAPSLYDTREPVDQQLSGIS 522


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 46  VDIQFTNITCTVHLGFNKGCK 66
           ++I+FT   C++  G    CK
Sbjct: 88  IEIKFTTRDCSLFPGNALSCK 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 60  GFNKGCKVIIPCAV 73
           G ++GC  ++ C V
Sbjct: 141 GASRGCTAVLRCVV 154


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 60  GFNKGCKVIIPCAV 73
           G ++GC  ++ C V
Sbjct: 141 GASRGCTAVLRCVV 154


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475
Number of Sequences: 429
Number of extensions: 866
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 140,377
effective HSP length: 46
effective length of query: 30
effective length of database: 120,643
effective search space:  3619290
effective search space used:  3619290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)