GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005224-TA|BGIBMGA005224-PA|undefined
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   2.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 90  RMTVMVGINIVDSTIVQHCRATFLSWSIFVFVGMV 124
           R T+M      D   VQH    FL+  +F+ VG+V
Sbjct: 383 RQTLMFSATFPDE--VQHLARRFLNNYLFLAVGIV 415


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 102 STIVQHCRATFLSWSIFVFVGMVVACFLP 130
           S I +  R T  + ++ V VG  VAC+LP
Sbjct: 293 SCINRVARETKTAGTLAVVVGGFVACWLP 321


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 92  TVMVGINIVDSTIVQHCRATFLSWSIFVFVGMVVACFLPKETTTTR 137
           +V+  +   +S I     A F     F F  ++  CF  + T T R
Sbjct: 45  SVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 92  TVMVGINIVDSTIVQHCRATFLSWSIFVFVGMVVACFLPKETTTTR 137
           +V+  +   +S I     A F     F F  ++  CF  + T T R
Sbjct: 493 SVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLR 538


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,834
Number of Sequences: 429
Number of extensions: 884
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 40 (20.2 bits)