GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005223-TA|BGIBMGA005223-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   1.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   6.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    20   6.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   8.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 3  VMLAVGGFVIFFLHESPKFLATKGRVDEALEVMKTGYGLKDR 44
          ++ A+G   +  L+  PK    K  +    E +  G  +KDR
Sbjct: 39 ILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDR 80


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 55  ITKDTGNERKVPFMKSLWQQTAPIFSRPYLMKTL 88
           + +DT N   V  ++   + + PIF R  +   L
Sbjct: 150 VKRDTINPEDVILIRRTGEGSKPIFEREEIKNVL 183


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 55  ITKDTGNERKVPFMKSLWQQTAPIFSRPYLMKTL 88
           + +DT N   V  ++   + + PIF R  +   L
Sbjct: 150 VKRDTINPEDVILIRRTGEGSKPIFEREEIKNVL 183


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 43  DRDVDLVKSLLTITKDTGNERK 64
           +RD  LV +  T+T++  N  K
Sbjct: 129 ERDNHLVNAFKTLTQEPKNTNK 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,544
Number of Sequences: 429
Number of extensions: 854
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)