GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005222-TA|BGIBMGA005222-PA|IPR012981|Nop17p
         (296 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 53  NKKVFVNICQTDAIPCP 69
           NKK++ NI   + IP P
Sbjct: 109 NKKLYYNIINIEQIPVP 125


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 53  NKKVFVNICQTDAIPCP 69
           NKK++ NI   + IP P
Sbjct: 109 NKKLYYNIINIEQIPVP 125


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 53  NKKVFVNICQTDAIPCP 69
           NKK++ NI   + IP P
Sbjct: 329 NKKLYYNIINIEQIPVP 345


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 53  NKKVFVNICQTDAIPCP 69
           NKK++ NI   + IP P
Sbjct: 333 NKKLYYNIINIEQIPVP 349


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 91   VPMSIGEGRTEHDKSGAPATAYDVAVNPE 119
            VP ++   +TE D  G+PA    V  +P+
Sbjct: 1200 VPTTVTYCQTEEDVPGSPADIKVVVSSPQ 1228


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 91   VPMSIGEGRTEHDKSGAPATAYDVAVNPE 119
            VP ++   +TE D  G+PA    V  +P+
Sbjct: 1196 VPTTVTYCQTEEDVPGSPADIKVVVSSPQ 1224


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 52  DNKKVFVNICQTDAIPCP 69
           +NKK++ NI   + IP P
Sbjct: 322 NNKKLYYNINYIEQIPVP 339


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,120
Number of Sequences: 429
Number of extensions: 4257
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 296
length of database: 140,377
effective HSP length: 57
effective length of query: 239
effective length of database: 115,924
effective search space: 27705836
effective search space used: 27705836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)