GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005221-TA|BGIBMGA005221-PA|undefined
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    26   2.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    24   9.8  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    24   9.8  

>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 6   SVGGDVESSSIISEREDVQA 25
           SVGGD ES  +++E  D++A
Sbjct: 307 SVGGDPESDILLNEGNDIEA 326


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 86  VRHCRCTKPTTSWQQKLRTCVGVTNAVLTRS 116
           V +C  +KPT S + +L  CV V  A +T S
Sbjct: 514 VSNCNPSKPTWSRKLRLLQCVFVPFAFVTFS 544


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 94  PTTSWQQKLRTCVGVTNAV 112
           PT    +KLR C G+ N V
Sbjct: 498 PTPEMLEKLRRCKGIANTV 516


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,067
Number of Sequences: 5004
Number of extensions: 14789
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 138
length of database: 2,362,478
effective HSP length: 66
effective length of query: 72
effective length of database: 2,032,214
effective search space: 146319408
effective search space used: 146319408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)