GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005221-TA|BGIBMGA005221-PA|undefined
         (138 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         20   8.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 92  TKPTTSWQQKLRTCVGVTNAVLTRSHMSNIAETQNQPFPGNE 133
           T+ TT+   K  T +G     + +S   ++ ++  Q FP ++
Sbjct: 881 TQITTNTPAKKATNIGGKPVAVVKSSAQSLLQSNQQHFPHHQ 922


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 5   SSVGGDVESSSIISEREDVQARRDG 29
           ++V   V+SSSI+S  +  + +R G
Sbjct: 379 AAVAAAVQSSSIVSSPDSARHQRIG 403


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 75  TIKC--SADAEPHVRHC----RCTKPTTSWQQKLRTCVGVTNAVLTRSHMSNIAETQNQP 128
           T++C      + H   C    +  KP  S      + +  T + + R+H+++     N P
Sbjct: 296 TVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 86  VRHCRCTKPTTSWQQK 101
           +RH R T    SWQ K
Sbjct: 57  LRHRRVTCDVLSWQSK 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,500
Number of Sequences: 429
Number of extensions: 947
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 138
length of database: 140,377
effective HSP length: 52
effective length of query: 86
effective length of database: 118,069
effective search space: 10153934
effective search space used: 10153934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)