GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005219-TA|BGIBMGA005219-PA|undefined
         (53 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   1.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   1.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   2.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   4.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 9   FDHWTTAVQSLSILPGGVNGTQSRV 33
           FD +   V+ LS  P  +NG   R+
Sbjct: 148 FDRYNVIVKGLSGKPLSINGALIRI 172


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 9   FDHWTTAVQSLSILPGGVNGTQSRV 33
           FD +   V+ LS  P  +NG   R+
Sbjct: 114 FDRYNVIVKGLSGKPLSINGALIRI 138


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 9  FDHWTTAVQSLSILPGGVNGTQSRV 33
          FD +   V+ LS  P  +NG   R+
Sbjct: 24 FDRYNVIVKGLSGKPLSINGALIRI 48


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
          receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 2.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 3  IRLGTFFDHWTTAVQSLSILPGGVNGTQSRVSPA 36
          + LG F D       +    PGG + + S  SP+
Sbjct: 64 VELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPS 97


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 12 WTTAVQSLSILPGGVN 27
          WT    S  I+PG VN
Sbjct: 47 WTGKQISSLIIPGNVN 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8989
Number of Sequences: 429
Number of extensions: 177
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 140,377
effective HSP length: 33
effective length of query: 20
effective length of database: 126,220
effective search space:  2524400
effective search space used:  2524400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)