GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005218-TA|BGIBMGA005218-PA|undefined
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   2.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 57  EGPGLHGLKRRYRPG 71
           E P + G+KR Y PG
Sbjct: 171 EFPMMAGIKRTYEPG 185


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 15  RLTIEAATQTASGRYTCE 32
           ++ I+ ATQ  +G Y C+
Sbjct: 84  KMEIDPATQKDAGYYECQ 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 16  LTIEAATQTASGRYTC-------EVSADAPSFQTAQVHTHMYVVVLPV 56
           L +EA T   +G Y C       E SA+     TA +H  +   +L V
Sbjct: 295 LALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSV 342



 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 15  RLTIEAATQTASGRYTCEVS 34
           +L I +A  + SG Y C+ S
Sbjct: 871 QLQISSAEASDSGAYFCQAS 890


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 16  LTIEAATQTASGRYTC-------EVSADAPSFQTAQVHTHMYVVVLPV 56
           L +EA T   +G Y C       E SA+     TA +H  +   +L V
Sbjct: 295 LALEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSV 342



 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 15  RLTIEAATQTASGRYTCEVS 34
           +L I +A  + SG Y C+ S
Sbjct: 867 QLQISSAEASDSGAYFCQAS 886


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 5   ISQKEGTDAERLTIEAATQTASGRYTCEVSADAPSFQ 41
           + QK+  +AE   I   TQ+    +     A +PS Q
Sbjct: 650 LRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQ 686


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,156
Number of Sequences: 429
Number of extensions: 1003
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)