GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005215-TA|BGIBMGA005215-PA|IPR003409|MORN motif,
IPR002345|Lipocalin
         (305 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.83 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 56  LYVFKNGARYEGEWRRAMKYGVGQMIYPDGSRYEGDW 92
           LY+  NG  ++ E+       +G  +Y  GS  E DW
Sbjct: 362 LYLTYNGTVHDVEFPGXYTMVIGSGVYRIGSSVEFDW 398


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 3   EEKGEGPEDVDTIGIYVGGRNADGERHGE 31
           EE+ E    V   G  VG  NA+GE  GE
Sbjct: 360 EEEEEEVVVVGRNGAGVGAMNANGEAVGE 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,321
Number of Sequences: 429
Number of extensions: 3528
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 140,377
effective HSP length: 57
effective length of query: 248
effective length of database: 115,924
effective search space: 28749152
effective search space used: 28749152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)